An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.rse.2022.113429 http://hdl.handle.net/11449/246610 |
Resumo: | In tropical forests, leaf phenology signals leaf-on/off status and exhibits considerable variability across scales from a single tree-crown to the entire forest ecosystem. Such phenology signals importantly regulate large-scale biogeochemical cycles and regional climate. PlanetScope CubeSats data with a 3-m resolution and near-daily global coverage provide an unprecedented opportunity to monitor both fine- and ecosystem-scale phenology variability along large environmental gradients. However, a scalable method that accurately characterizes leaf phenology from PlanetScope with biophysically meaningful metrics remains lacking. We developed an index-guided, ecologically constrained autoencoder (IG-ECAE) method to automatically derive a deciduousness metric (percentage of upper tree canopies with leaf-off status within an image pixel) from PlanetScope. The IG-ECAE first estimated the reflectance spectra of leafy/leafless canopies based on their spectral indices characteristics, then used the derived reflectance spectra to guide an autoencoder deep learning method with additional ecological constraints to refine the reflectance spectra, and finally used linear spectral unmixing to estimate the relative abundance of leafless canopies (or deciduousness) per PlanetScope image pixel. We tested the IG-ECAE method at 16 tropical forest sites spanning multiple continents and a large precipitation gradient (1470–2819 mm year−1). Among these sites, we evaluated the PlanetScope-derived deciduousness against corresponding measures derived from WorldView-2 (n = 9 sites) and local phenocams (n = 9 sites). Our results show that PlanetScope-derived deciduousness agrees: 1) with that derived from WorldView-2 at the patch level (90 m × 90 m) with r2 = 0.89 across all sites; and 2) with that derived from phenocams to quantify ecosystem-scale seasonality with r2 ranging from 0.62 to 0.96. These results demonstrate the effectiveness and scalability of IG-ECAE in characterizing the wide variability in deciduousness across scales from pixels to forest ecosystems, and from a single date to the full annual cycle, indicating the potential for using high-resolution satellites to track the large-scale phenological patterns and response of tropical forests to climate change. |
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An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellitesCarbon cyclesDeciduousnessEnvironmental gradientMachine learningMulti-scale remote sensingTropical forestsIn tropical forests, leaf phenology signals leaf-on/off status and exhibits considerable variability across scales from a single tree-crown to the entire forest ecosystem. Such phenology signals importantly regulate large-scale biogeochemical cycles and regional climate. PlanetScope CubeSats data with a 3-m resolution and near-daily global coverage provide an unprecedented opportunity to monitor both fine- and ecosystem-scale phenology variability along large environmental gradients. However, a scalable method that accurately characterizes leaf phenology from PlanetScope with biophysically meaningful metrics remains lacking. We developed an index-guided, ecologically constrained autoencoder (IG-ECAE) method to automatically derive a deciduousness metric (percentage of upper tree canopies with leaf-off status within an image pixel) from PlanetScope. The IG-ECAE first estimated the reflectance spectra of leafy/leafless canopies based on their spectral indices characteristics, then used the derived reflectance spectra to guide an autoencoder deep learning method with additional ecological constraints to refine the reflectance spectra, and finally used linear spectral unmixing to estimate the relative abundance of leafless canopies (or deciduousness) per PlanetScope image pixel. We tested the IG-ECAE method at 16 tropical forest sites spanning multiple continents and a large precipitation gradient (1470–2819 mm year−1). Among these sites, we evaluated the PlanetScope-derived deciduousness against corresponding measures derived from WorldView-2 (n = 9 sites) and local phenocams (n = 9 sites). Our results show that PlanetScope-derived deciduousness agrees: 1) with that derived from WorldView-2 at the patch level (90 m × 90 m) with r2 = 0.89 across all sites; and 2) with that derived from phenocams to quantify ecosystem-scale seasonality with r2 ranging from 0.62 to 0.96. These results demonstrate the effectiveness and scalability of IG-ECAE in characterizing the wide variability in deciduousness across scales from pixels to forest ecosystems, and from a single date to the full annual cycle, indicating the potential for using high-resolution satellites to track the large-scale phenological patterns and response of tropical forests to climate change.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)University of Hong KongNational Natural Science Foundation of ChinaU.S. Department of EnergySchool of Ecology Shenzhen Campus of Sun Yat-sen University, GuangdongResearch Area of Ecology and Biodiversity School for Biological Sciences The University of Hong KongCentre for Tropical Environmental and Sustainability Science College of Science and Engineering James Cook UniversityDepartment of Biodiversity Bioscience Institute São Paulo State University UNESP, São PauloDepartment of Environmental and Climate Sciences Brookhaven National LaboratoryInstituto Tecnológico Vale, ParáDepartment of Ecology and Evolutionary Biology Princeton UniversityCollege of Earth and Environmental Sciences Lanzhou UniversityInternational Research Center of Big Data for Sustainable Development GoalsKey Laboratory of Geographic Information Science (Ministry of Education) East China Normal UniversityDepartment of Geography The University of Hong KongInstitute for Climate and Carbon Neutrality The University of Hong KongInstitute of Data Science and Department of Mathematics The University of Hong KongNational Institute for Amazon Research (INPA)School of Life Sciences University of Technology SydneyDepartment of Biodiversity Bioscience Institute São Paulo State University UNESP, São PauloShenzhen Campus of Sun Yat-sen UniversityThe University of Hong KongJames Cook UniversityUniversidade Estadual Paulista (UNESP)Brookhaven National LaboratoryInstituto Tecnológico ValePrinceton UniversityLanzhou UniversityInternational Research Center of Big Data for Sustainable Development GoalsEast China Normal UniversityNational Institute for Amazon Research (INPA)University of Technology SydneyWang, JingSong, GuangqinLiddell, MichaelMorellato, Patricia [UNESP]Lee, Calvin K.F.Yang, DediAlberton, Bruna [UNESP]Detto, MatteoMa, XuanlongZhao, YingyiYeung, Henry C.H.Zhang, HongshengNg, MichaelNelson, Bruce W.Huete, AlfredoWu, Jin2023-07-29T12:45:40Z2023-07-29T12:45:40Z2023-03-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.rse.2022.113429Remote Sensing of Environment, v. 286.0034-4257http://hdl.handle.net/11449/24661010.1016/j.rse.2022.1134292-s2.0-85145773613Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengRemote Sensing of Environmentinfo:eu-repo/semantics/openAccess2023-07-29T12:45:40Zoai:repositorio.unesp.br:11449/246610Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:37:23.832315Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
title |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
spellingShingle |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites Wang, Jing Carbon cycles Deciduousness Environmental gradient Machine learning Multi-scale remote sensing Tropical forests |
title_short |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
title_full |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
title_fullStr |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
title_full_unstemmed |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
title_sort |
An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites |
author |
Wang, Jing |
author_facet |
Wang, Jing Song, Guangqin Liddell, Michael Morellato, Patricia [UNESP] Lee, Calvin K.F. Yang, Dedi Alberton, Bruna [UNESP] Detto, Matteo Ma, Xuanlong Zhao, Yingyi Yeung, Henry C.H. Zhang, Hongsheng Ng, Michael Nelson, Bruce W. Huete, Alfredo Wu, Jin |
author_role |
author |
author2 |
Song, Guangqin Liddell, Michael Morellato, Patricia [UNESP] Lee, Calvin K.F. Yang, Dedi Alberton, Bruna [UNESP] Detto, Matteo Ma, Xuanlong Zhao, Yingyi Yeung, Henry C.H. Zhang, Hongsheng Ng, Michael Nelson, Bruce W. Huete, Alfredo Wu, Jin |
author2_role |
author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Shenzhen Campus of Sun Yat-sen University The University of Hong Kong James Cook University Universidade Estadual Paulista (UNESP) Brookhaven National Laboratory Instituto Tecnológico Vale Princeton University Lanzhou University International Research Center of Big Data for Sustainable Development Goals East China Normal University National Institute for Amazon Research (INPA) University of Technology Sydney |
dc.contributor.author.fl_str_mv |
Wang, Jing Song, Guangqin Liddell, Michael Morellato, Patricia [UNESP] Lee, Calvin K.F. Yang, Dedi Alberton, Bruna [UNESP] Detto, Matteo Ma, Xuanlong Zhao, Yingyi Yeung, Henry C.H. Zhang, Hongsheng Ng, Michael Nelson, Bruce W. Huete, Alfredo Wu, Jin |
dc.subject.por.fl_str_mv |
Carbon cycles Deciduousness Environmental gradient Machine learning Multi-scale remote sensing Tropical forests |
topic |
Carbon cycles Deciduousness Environmental gradient Machine learning Multi-scale remote sensing Tropical forests |
description |
In tropical forests, leaf phenology signals leaf-on/off status and exhibits considerable variability across scales from a single tree-crown to the entire forest ecosystem. Such phenology signals importantly regulate large-scale biogeochemical cycles and regional climate. PlanetScope CubeSats data with a 3-m resolution and near-daily global coverage provide an unprecedented opportunity to monitor both fine- and ecosystem-scale phenology variability along large environmental gradients. However, a scalable method that accurately characterizes leaf phenology from PlanetScope with biophysically meaningful metrics remains lacking. We developed an index-guided, ecologically constrained autoencoder (IG-ECAE) method to automatically derive a deciduousness metric (percentage of upper tree canopies with leaf-off status within an image pixel) from PlanetScope. The IG-ECAE first estimated the reflectance spectra of leafy/leafless canopies based on their spectral indices characteristics, then used the derived reflectance spectra to guide an autoencoder deep learning method with additional ecological constraints to refine the reflectance spectra, and finally used linear spectral unmixing to estimate the relative abundance of leafless canopies (or deciduousness) per PlanetScope image pixel. We tested the IG-ECAE method at 16 tropical forest sites spanning multiple continents and a large precipitation gradient (1470–2819 mm year−1). Among these sites, we evaluated the PlanetScope-derived deciduousness against corresponding measures derived from WorldView-2 (n = 9 sites) and local phenocams (n = 9 sites). Our results show that PlanetScope-derived deciduousness agrees: 1) with that derived from WorldView-2 at the patch level (90 m × 90 m) with r2 = 0.89 across all sites; and 2) with that derived from phenocams to quantify ecosystem-scale seasonality with r2 ranging from 0.62 to 0.96. These results demonstrate the effectiveness and scalability of IG-ECAE in characterizing the wide variability in deciduousness across scales from pixels to forest ecosystems, and from a single date to the full annual cycle, indicating the potential for using high-resolution satellites to track the large-scale phenological patterns and response of tropical forests to climate change. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-07-29T12:45:40Z 2023-07-29T12:45:40Z 2023-03-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.rse.2022.113429 Remote Sensing of Environment, v. 286. 0034-4257 http://hdl.handle.net/11449/246610 10.1016/j.rse.2022.113429 2-s2.0-85145773613 |
url |
http://dx.doi.org/10.1016/j.rse.2022.113429 http://hdl.handle.net/11449/246610 |
identifier_str_mv |
Remote Sensing of Environment, v. 286. 0034-4257 10.1016/j.rse.2022.113429 2-s2.0-85145773613 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Remote Sensing of Environment |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129228572459008 |