Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.ecss.2015.07.009 http://hdl.handle.net/11449/172263 |
Resumo: | The pink shrimp Farfantepenaeus paulensis is one of the most commercially exploited species in Brazil's South and Southeastern regions. Specific information about the status of its genetic variation is necessary to promote more effective management procedures. The genetic variation of the population of F. paulensis was investigated in five localities along southern and southeastern coast of Brazil. Sampling was performed with a commercial fishing boat. Total genomic DNA was extracted from abdominal muscle tissues and was used to DNA amplification by PCR. The COI gene was used as a DNA barcoding marker. The 570 bp COI gene sequences were obtained from all 45 individuals. The haplotype network showed no genetic variability among the population stocks, which was confirmed by Molecular Variance Analysis. The final alignment showed that inside species there is haplotype sharing among the sampled localities, since one haplotype is shared by 38 individuals belonging to all the five sampled regions, with no biogeographic pattern. This result is reasonable since there are no geographical barriers or habitat disjunction that might serve as a barrier to gene flow among the sampled localities. Possible reasons and consequences of the genetic homogeneity found are discussed. The results complement ecological studies concerning the offseason: since it is a single stock, the same protection strategy can be applied. However, the genetic homogeneity found in this study combined with the intensive fishery effort and the species biology can result in severe consequences for the F. paulensis. |
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Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding geneCytochrome oxidase IFishery stocksGene flowGenetic homogeneityPenaeidaeThe pink shrimp Farfantepenaeus paulensis is one of the most commercially exploited species in Brazil's South and Southeastern regions. Specific information about the status of its genetic variation is necessary to promote more effective management procedures. The genetic variation of the population of F. paulensis was investigated in five localities along southern and southeastern coast of Brazil. Sampling was performed with a commercial fishing boat. Total genomic DNA was extracted from abdominal muscle tissues and was used to DNA amplification by PCR. The COI gene was used as a DNA barcoding marker. The 570 bp COI gene sequences were obtained from all 45 individuals. The haplotype network showed no genetic variability among the population stocks, which was confirmed by Molecular Variance Analysis. The final alignment showed that inside species there is haplotype sharing among the sampled localities, since one haplotype is shared by 38 individuals belonging to all the five sampled regions, with no biogeographic pattern. This result is reasonable since there are no geographical barriers or habitat disjunction that might serve as a barrier to gene flow among the sampled localities. Possible reasons and consequences of the genetic homogeneity found are discussed. The results complement ecological studies concerning the offseason: since it is a single stock, the same protection strategy can be applied. However, the genetic homogeneity found in this study combined with the intensive fishery effort and the species biology can result in severe consequences for the F. paulensis.Laboratory of Biology of Marine and Freshwater Shrimp (LABCAM) Department of Biological Sciences Faculty of Sciences University of State of São Paulo (UNESP), Av. Eng. Luiz Edmundo Corrijo CoubeLaboratory of Bioecology and Crustacean Systematics (LBSC) Department of Biology Faculty of Philosophy Science and Letters at Ribeirão Preto (FFCLRP) University of São Paulo (USP)Laboratory of Biology of Marine and Freshwater Shrimp (LABCAM) Department of Biological Sciences Faculty of Sciences University of State of São Paulo (UNESP), Av. Eng. Luiz Edmundo Corrijo CoubeUniversidade Estadual Paulista (Unesp)Universidade de São Paulo (USP)Teodoro, S. S A [UNESP]Terossi, M.Costa, R. C. [UNESP]Mantelatto, F. L.2018-12-11T16:59:25Z2018-12-11T16:59:25Z2015-12-05info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article124-130application/pdfhttp://dx.doi.org/10.1016/j.ecss.2015.07.009Estuarine, Coastal and Shelf Science, v. 166, p. 124-130.0272-7714http://hdl.handle.net/11449/17226310.1016/j.ecss.2015.07.0092-s2.0-849492178622-s2.0-84949217862.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengEstuarine, Coastal and Shelf Science1,059info:eu-repo/semantics/openAccess2023-11-21T06:08:19Zoai:repositorio.unesp.br:11449/172263Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:17:04.124384Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
title |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
spellingShingle |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene Teodoro, S. S A [UNESP] Cytochrome oxidase I Fishery stocks Gene flow Genetic homogeneity Penaeidae |
title_short |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
title_full |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
title_fullStr |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
title_full_unstemmed |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
title_sort |
Genetic homogeneity in the commercial pink shrimp Farfantepenaeus paulensis revealed by COI barcoding gene |
author |
Teodoro, S. S A [UNESP] |
author_facet |
Teodoro, S. S A [UNESP] Terossi, M. Costa, R. C. [UNESP] Mantelatto, F. L. |
author_role |
author |
author2 |
Terossi, M. Costa, R. C. [UNESP] Mantelatto, F. L. |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidade de São Paulo (USP) |
dc.contributor.author.fl_str_mv |
Teodoro, S. S A [UNESP] Terossi, M. Costa, R. C. [UNESP] Mantelatto, F. L. |
dc.subject.por.fl_str_mv |
Cytochrome oxidase I Fishery stocks Gene flow Genetic homogeneity Penaeidae |
topic |
Cytochrome oxidase I Fishery stocks Gene flow Genetic homogeneity Penaeidae |
description |
The pink shrimp Farfantepenaeus paulensis is one of the most commercially exploited species in Brazil's South and Southeastern regions. Specific information about the status of its genetic variation is necessary to promote more effective management procedures. The genetic variation of the population of F. paulensis was investigated in five localities along southern and southeastern coast of Brazil. Sampling was performed with a commercial fishing boat. Total genomic DNA was extracted from abdominal muscle tissues and was used to DNA amplification by PCR. The COI gene was used as a DNA barcoding marker. The 570 bp COI gene sequences were obtained from all 45 individuals. The haplotype network showed no genetic variability among the population stocks, which was confirmed by Molecular Variance Analysis. The final alignment showed that inside species there is haplotype sharing among the sampled localities, since one haplotype is shared by 38 individuals belonging to all the five sampled regions, with no biogeographic pattern. This result is reasonable since there are no geographical barriers or habitat disjunction that might serve as a barrier to gene flow among the sampled localities. Possible reasons and consequences of the genetic homogeneity found are discussed. The results complement ecological studies concerning the offseason: since it is a single stock, the same protection strategy can be applied. However, the genetic homogeneity found in this study combined with the intensive fishery effort and the species biology can result in severe consequences for the F. paulensis. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-12-05 2018-12-11T16:59:25Z 2018-12-11T16:59:25Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.ecss.2015.07.009 Estuarine, Coastal and Shelf Science, v. 166, p. 124-130. 0272-7714 http://hdl.handle.net/11449/172263 10.1016/j.ecss.2015.07.009 2-s2.0-84949217862 2-s2.0-84949217862.pdf |
url |
http://dx.doi.org/10.1016/j.ecss.2015.07.009 http://hdl.handle.net/11449/172263 |
identifier_str_mv |
Estuarine, Coastal and Shelf Science, v. 166, p. 124-130. 0272-7714 10.1016/j.ecss.2015.07.009 2-s2.0-84949217862 2-s2.0-84949217862.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Estuarine, Coastal and Shelf Science 1,059 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
124-130 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128916717568000 |