Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera

Detalhes bibliográficos
Autor(a) principal: Kadri, Samir M. [UNESP]
Data de Publicação: 2016
Outros Autores: Harpur, Brock A., Orsi, Ricardo O. [UNESP], Zayed, Amro
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/sdata.2016.97
http://hdl.handle.net/11449/169130
Resumo: The Africanized honeybee (AHB) is a population of Apis mellifera found in the Americas. AHBs originated in 1956 in Rio Clara, Brazil where imported African A. m. scutellata escaped and hybridized with local populations of European A. mellifera. Africanized populations can now be found from Northern Argentina to the Southern United States. AHBs - often referred to as 'Killer Bees' -are a major concern to the beekeeping industry as well as a model for the evolutionary genetics of colony defence. We performed high coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies using Illumina Hi-Seq (150 bp PE). This yielded a high density SNP data set with an average read depth at each site of 20.25 reads. With 3,606,720 SNPs and 155,336 SNPs within 11,365 genes, this data set is the largest genomic resource available for AHBs and will enable high-resolution studies of the population dynamics, evolution, and genetics of this successful biological invader, in addition to facilitating the development of SNP-based tools for identifying AHBs.
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spelling Data Descriptor: A variant reference data set for the Africanized honeybee, Apis melliferaThe Africanized honeybee (AHB) is a population of Apis mellifera found in the Americas. AHBs originated in 1956 in Rio Clara, Brazil where imported African A. m. scutellata escaped and hybridized with local populations of European A. mellifera. Africanized populations can now be found from Northern Argentina to the Southern United States. AHBs - often referred to as 'Killer Bees' -are a major concern to the beekeeping industry as well as a model for the evolutionary genetics of colony defence. We performed high coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies using Illumina Hi-Seq (150 bp PE). This yielded a high density SNP data set with an average read depth at each site of 20.25 reads. With 3,606,720 SNPs and 155,336 SNPs within 11,365 genes, this data set is the largest genomic resource available for AHBs and will enable high-resolution studies of the population dynamics, evolution, and genetics of this successful biological invader, in addition to facilitating the development of SNP-based tools for identifying AHBs.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Natural Sciences and Engineering Research Council of CanadaDepartamento de Produ��o Animal Faculdade de Medicina Veterin�ria e Zootecnia Univ Estadual Paulista UNESPDepartment of Biology Faculty of Sciences York UniversityDepartamento de Produ��o Animal Faculdade de Medicina Veterin�ria e Zootecnia Univ Estadual Paulista UNESPFAPESP: 2014/10150-2Universidade Estadual Paulista (Unesp)York UniversityKadri, Samir M. [UNESP]Harpur, Brock A.Orsi, Ricardo O. [UNESP]Zayed, Amro2018-12-11T16:44:35Z2018-12-11T16:44:35Z2016-11-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1038/sdata.2016.97Scientific Data, v. 3.2052-4463http://hdl.handle.net/11449/16913010.1038/sdata.2016.972-s2.0-849947452052-s2.0-84994745205.pdf2-s2.0-84994745205.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Data3,026info:eu-repo/semantics/openAccess2023-11-29T06:16:51Zoai:repositorio.unesp.br:11449/169130Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-29T06:16:51Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
title Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
spellingShingle Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
Kadri, Samir M. [UNESP]
title_short Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
title_full Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
title_fullStr Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
title_full_unstemmed Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
title_sort Data Descriptor: A variant reference data set for the Africanized honeybee, Apis mellifera
author Kadri, Samir M. [UNESP]
author_facet Kadri, Samir M. [UNESP]
Harpur, Brock A.
Orsi, Ricardo O. [UNESP]
Zayed, Amro
author_role author
author2 Harpur, Brock A.
Orsi, Ricardo O. [UNESP]
Zayed, Amro
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
York University
dc.contributor.author.fl_str_mv Kadri, Samir M. [UNESP]
Harpur, Brock A.
Orsi, Ricardo O. [UNESP]
Zayed, Amro
description The Africanized honeybee (AHB) is a population of Apis mellifera found in the Americas. AHBs originated in 1956 in Rio Clara, Brazil where imported African A. m. scutellata escaped and hybridized with local populations of European A. mellifera. Africanized populations can now be found from Northern Argentina to the Southern United States. AHBs - often referred to as 'Killer Bees' -are a major concern to the beekeeping industry as well as a model for the evolutionary genetics of colony defence. We performed high coverage pooled-resequencing of 360 diploid workers from 30 Brazilian AHB colonies using Illumina Hi-Seq (150 bp PE). This yielded a high density SNP data set with an average read depth at each site of 20.25 reads. With 3,606,720 SNPs and 155,336 SNPs within 11,365 genes, this data set is the largest genomic resource available for AHBs and will enable high-resolution studies of the population dynamics, evolution, and genetics of this successful biological invader, in addition to facilitating the development of SNP-based tools for identifying AHBs.
publishDate 2016
dc.date.none.fl_str_mv 2016-11-08
2018-12-11T16:44:35Z
2018-12-11T16:44:35Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/sdata.2016.97
Scientific Data, v. 3.
2052-4463
http://hdl.handle.net/11449/169130
10.1038/sdata.2016.97
2-s2.0-84994745205
2-s2.0-84994745205.pdf
2-s2.0-84994745205.pdf
url http://dx.doi.org/10.1038/sdata.2016.97
http://hdl.handle.net/11449/169130
identifier_str_mv Scientific Data, v. 3.
2052-4463
10.1038/sdata.2016.97
2-s2.0-84994745205
2-s2.0-84994745205.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Data
3,026
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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