Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species

Detalhes bibliográficos
Autor(a) principal: Moraes, Isabela R. R. [UNESP]
Data de Publicação: 2022
Outros Autores: Pardo, Luis Miguel, Araya-Jaime, Cristian, Wolf, Milena Regina [UNESP], Yasui, George Shigueki, Solano-Iguaran, Jaiber J., Romagnoli, Graziela Gorete, Alevi, Kaio Cesar Chaboli [UNESP], Castilho, Antonio Leao [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1139/gen-2022-0015
http://hdl.handle.net/11449/237896
Resumo: Genome size (GS) or DNA nuclear content is considered a useful index for making inferences about evolutionary models and life history in animals, including taxonomic, biogeographical, and ecological scenarios. However, patterns of GS variation and their causes in crustaceans are still poorly understood. This study aimed to describe the GS of five Neotropical Synalpheus non-gambarelloides shrimps (S. apioceros, S. minus, S. brevicarpus, S. fritzmueller, and S. scaphoceris) and compare the C-values of all Caridea infraorder in terms of geography and phylogenetics. All animals were sampled in the coast of Sao Paulo State, Brazil, and GS was assessed by flow cytometry analysis (FCA). The C-values ranged from 7.89 pg in S. apioceros to 12.24 pg in S. scaphoceris. Caridean shrimps had higher GS than other Decapoda crustaceans. The results reveal a tendency of obtaining larger genomes in species with direct development in Synalpheus shrimps. In addition, a tendency of positive biogeographical (latitudinal) correlation with Caridea infraorder was also observed. This study provides remarkable and new protocol for FCA (using gating strategy for the analysis), which led to the discovery of new information regarding GS of caridean shrimps, especially for Neotropical Synalpheus, which represents the second-largest group in the Caridea infraorder.
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spelling Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus speciesC-valueSnapping shrimpDecapodaDNA contentGenome size (GS) or DNA nuclear content is considered a useful index for making inferences about evolutionary models and life history in animals, including taxonomic, biogeographical, and ecological scenarios. However, patterns of GS variation and their causes in crustaceans are still poorly understood. This study aimed to describe the GS of five Neotropical Synalpheus non-gambarelloides shrimps (S. apioceros, S. minus, S. brevicarpus, S. fritzmueller, and S. scaphoceris) and compare the C-values of all Caridea infraorder in terms of geography and phylogenetics. All animals were sampled in the coast of Sao Paulo State, Brazil, and GS was assessed by flow cytometry analysis (FCA). The C-values ranged from 7.89 pg in S. apioceros to 12.24 pg in S. scaphoceris. Caridean shrimps had higher GS than other Decapoda crustaceans. The results reveal a tendency of obtaining larger genomes in species with direct development in Synalpheus shrimps. In addition, a tendency of positive biogeographical (latitudinal) correlation with Caridea infraorder was also observed. This study provides remarkable and new protocol for FCA (using gating strategy for the analysis), which led to the discovery of new information regarding GS of caridean shrimps, especially for Neotropical Synalpheus, which represents the second-largest group in the Caridea infraorder.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Univ Estadual Paulista Julio Mesquita Filho UNESP, Rua Prof Dr Antonio Celso Wagner Zanin, 250, BR-18618689 Botucatu, SP, BrazilUniv Austral Chile, Fac Ciencias, Inst Ciencias Marinas & Limnol, Valdivia 5090000, ChileCtr Invest Dinam Ecosistemas Marinos Altas Latitud, Punta Arenas 5090000, ChileUniv Serena, Dept Biol, La Serena 1720256, ChileUniv Serena, Inst Invest Multidisciplinar Ciencia & Tecnol, La Serena 1720256, ChileUniv Sao Paulo, Dept Anim Reprod, FMVZ, Ave Prof Dr Orlando Marques Pa, 87, BR-05508270 Sao Paulo, SP, BrazilInst Fomento Pesquero, Div Invest Acuicultura, Dept Salud Hidrobiol, Puerto Montt 2361827, ChileUniv Austral Chile, Fac Ciencias, Inst Ciencias Ambientales & Evolut, Casilla 567, Valdivia 5090000, ChileOeste Paulista Univ, Dept Hlth Sci, UNOESTE, Ave Toto Pacheco, 2945, Zona Ind, BR-17213700 Jau, SP, BrazilUniv Estadual Paulista, Rodovia Araraquara-Jau km 1, BR-14801902 Araraquara, SP, BrazilUniv Estadual Paulista Julio Mesquita Filho UNESP, Rua Prof Dr Antonio Celso Wagner Zanin, 250, BR-18618689 Botucatu, SP, BrazilUniv Estadual Paulista, Rodovia Araraquara-Jau km 1, BR-14801902 Araraquara, SP, BrazilFAPESP: 2016/20177-0CNPq: PQ 311034/2018-7CAPES: CAPES PRINT 88881.310767/201801CAPES: PROEX 23038.000802/2018-25Canadian Science PublishingUniversidade Estadual Paulista (UNESP)Univ Austral ChileCtr Invest Dinam Ecosistemas Marinos Altas LatitudUniv SerenaUniversidade de São Paulo (USP)Inst Fomento PesqueroOeste Paulista UnivMoraes, Isabela R. R. [UNESP]Pardo, Luis MiguelAraya-Jaime, CristianWolf, Milena Regina [UNESP]Yasui, George ShiguekiSolano-Iguaran, Jaiber J.Romagnoli, Graziela GoreteAlevi, Kaio Cesar Chaboli [UNESP]Castilho, Antonio Leao [UNESP]2022-11-30T13:47:54Z2022-11-30T13:47:54Z2022-08-02info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article10http://dx.doi.org/10.1139/gen-2022-0015Genome. Ottawa: Canadian Science Publishing, 10 p., 2022.0831-2796http://hdl.handle.net/11449/23789610.1139/gen-2022-0015WOS:000845065600001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenomeinfo:eu-repo/semantics/openAccess2024-09-09T14:00:30Zoai:repositorio.unesp.br:11449/237896Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-09T14:00:30Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
title Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
spellingShingle Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
Moraes, Isabela R. R. [UNESP]
C-value
Snapping shrimp
Decapoda
DNA content
title_short Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
title_full Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
title_fullStr Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
title_full_unstemmed Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
title_sort Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species
author Moraes, Isabela R. R. [UNESP]
author_facet Moraes, Isabela R. R. [UNESP]
Pardo, Luis Miguel
Araya-Jaime, Cristian
Wolf, Milena Regina [UNESP]
Yasui, George Shigueki
Solano-Iguaran, Jaiber J.
Romagnoli, Graziela Gorete
Alevi, Kaio Cesar Chaboli [UNESP]
Castilho, Antonio Leao [UNESP]
author_role author
author2 Pardo, Luis Miguel
Araya-Jaime, Cristian
Wolf, Milena Regina [UNESP]
Yasui, George Shigueki
Solano-Iguaran, Jaiber J.
Romagnoli, Graziela Gorete
Alevi, Kaio Cesar Chaboli [UNESP]
Castilho, Antonio Leao [UNESP]
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Univ Austral Chile
Ctr Invest Dinam Ecosistemas Marinos Altas Latitud
Univ Serena
Universidade de São Paulo (USP)
Inst Fomento Pesquero
Oeste Paulista Univ
dc.contributor.author.fl_str_mv Moraes, Isabela R. R. [UNESP]
Pardo, Luis Miguel
Araya-Jaime, Cristian
Wolf, Milena Regina [UNESP]
Yasui, George Shigueki
Solano-Iguaran, Jaiber J.
Romagnoli, Graziela Gorete
Alevi, Kaio Cesar Chaboli [UNESP]
Castilho, Antonio Leao [UNESP]
dc.subject.por.fl_str_mv C-value
Snapping shrimp
Decapoda
DNA content
topic C-value
Snapping shrimp
Decapoda
DNA content
description Genome size (GS) or DNA nuclear content is considered a useful index for making inferences about evolutionary models and life history in animals, including taxonomic, biogeographical, and ecological scenarios. However, patterns of GS variation and their causes in crustaceans are still poorly understood. This study aimed to describe the GS of five Neotropical Synalpheus non-gambarelloides shrimps (S. apioceros, S. minus, S. brevicarpus, S. fritzmueller, and S. scaphoceris) and compare the C-values of all Caridea infraorder in terms of geography and phylogenetics. All animals were sampled in the coast of Sao Paulo State, Brazil, and GS was assessed by flow cytometry analysis (FCA). The C-values ranged from 7.89 pg in S. apioceros to 12.24 pg in S. scaphoceris. Caridean shrimps had higher GS than other Decapoda crustaceans. The results reveal a tendency of obtaining larger genomes in species with direct development in Synalpheus shrimps. In addition, a tendency of positive biogeographical (latitudinal) correlation with Caridea infraorder was also observed. This study provides remarkable and new protocol for FCA (using gating strategy for the analysis), which led to the discovery of new information regarding GS of caridean shrimps, especially for Neotropical Synalpheus, which represents the second-largest group in the Caridea infraorder.
publishDate 2022
dc.date.none.fl_str_mv 2022-11-30T13:47:54Z
2022-11-30T13:47:54Z
2022-08-02
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1139/gen-2022-0015
Genome. Ottawa: Canadian Science Publishing, 10 p., 2022.
0831-2796
http://hdl.handle.net/11449/237896
10.1139/gen-2022-0015
WOS:000845065600001
url http://dx.doi.org/10.1139/gen-2022-0015
http://hdl.handle.net/11449/237896
identifier_str_mv Genome. Ottawa: Canadian Science Publishing, 10 p., 2022.
0831-2796
10.1139/gen-2022-0015
WOS:000845065600001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genome
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 10
dc.publisher.none.fl_str_mv Canadian Science Publishing
publisher.none.fl_str_mv Canadian Science Publishing
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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