Mapeamento citogenético comparativo em espécies de Glycine Willd

Detalhes bibliográficos
Autor(a) principal: OLIVEIRA, Ana Rafaela da Silva
Data de Publicação: 2012
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/8384
Resumo: Soybean [G. max (L) Merr.] is considered the main cultivated oil plant and also the first oilseed crop and legume sequenced, generating important genomic information. The present work aimed to perform a comparative genomic study, through in situ localization of eight BACs (Bacterial Artificial Chromosomes) sequences belonging to linkage groups G (pseudomolecule 18, four BACs) and J (pseudomolecule 16, four BACs) from G. max (2n = 40) in G. soja (2n = 40), G. syndetika (2n = 40), G. tabacina (2n = 80) and G. tomentella (2n = 78) chromosomes. Cytogenetic analyzes using the probes in G. max, G. soja and G. syndetika showed that seven BACs yielded single markers in only one or two chromosome pairs, except for G. soja with the BAC 176B09 (three pairs) and G. syndetika with BAC93L17 (four pairs). In G. max and G. soja, only 173N15 revealed a DNA repetitive mark when hybridized in situ in pericentromeric and centromeric regions in all chromosomes of G. max and 10 pairs of G. soja, showing differentiation of these regions throughout evolution. Due to the presence of repetitive DNA, the BAC has not been hybridized in the other species.In G. tabacina two BACs of each linkage group hybridized on a pair of homeologous chromosomes, equivalent being viewed some extra markers viewed for the Gm18 BACs. In relation to G. tomentella, only for the BACs of Gm16 (102N16 and 145O12) there was a conservation of synteny as compared with G. max, observing however the presence of some extra signals, such as duplication and translocation. The BACs of Gm18 (97L17 and 176B09) hybridized on different chromosomes (two pairs each) in G. tomentella, what indicate probable chromosomal rearrangements during evolution. For BACs 102N16 (Gm16) in G. tomentella, 93L17 (Gm18) in G. syndetika and G. tomentella and 176B09 (Gm18) in G. soja, one of the extra pairs was associated with a pair of 45S rDNA sites related to possible differences in the intergenic spacers of rDNA sites. It was also observed that for Gm18, the map orientation sequencing appears to be inverted with respect to the chromosome morphology. The results suggest a break of synteny for Gm16 in G. syndetika and G. tomentella and for Gm18 in all analyzed species.
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spelling VIDAL, Ana Christina BrasileiroISEPPON, Ana Maria BenkoBORTOLETI, Kyria Cilene de AndradeHARAND, Andrea PedrosaCARVALHO, Reginaldo dehttp://lattes.cnpq.br/0352391353737690OLIVEIRA, Ana Rafaela da Silva2019-11-28T14:40:16Z2012-10-31OLIVEIRA, Ana Rafaela da Silva. Mapeamento citogenético comparativo em espécies de Glycine Willd. 2012. 73 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/8384Soybean [G. max (L) Merr.] is considered the main cultivated oil plant and also the first oilseed crop and legume sequenced, generating important genomic information. The present work aimed to perform a comparative genomic study, through in situ localization of eight BACs (Bacterial Artificial Chromosomes) sequences belonging to linkage groups G (pseudomolecule 18, four BACs) and J (pseudomolecule 16, four BACs) from G. max (2n = 40) in G. soja (2n = 40), G. syndetika (2n = 40), G. tabacina (2n = 80) and G. tomentella (2n = 78) chromosomes. Cytogenetic analyzes using the probes in G. max, G. soja and G. syndetika showed that seven BACs yielded single markers in only one or two chromosome pairs, except for G. soja with the BAC 176B09 (three pairs) and G. syndetika with BAC93L17 (four pairs). In G. max and G. soja, only 173N15 revealed a DNA repetitive mark when hybridized in situ in pericentromeric and centromeric regions in all chromosomes of G. max and 10 pairs of G. soja, showing differentiation of these regions throughout evolution. Due to the presence of repetitive DNA, the BAC has not been hybridized in the other species.In G. tabacina two BACs of each linkage group hybridized on a pair of homeologous chromosomes, equivalent being viewed some extra markers viewed for the Gm18 BACs. In relation to G. tomentella, only for the BACs of Gm16 (102N16 and 145O12) there was a conservation of synteny as compared with G. max, observing however the presence of some extra signals, such as duplication and translocation. The BACs of Gm18 (97L17 and 176B09) hybridized on different chromosomes (two pairs each) in G. tomentella, what indicate probable chromosomal rearrangements during evolution. For BACs 102N16 (Gm16) in G. tomentella, 93L17 (Gm18) in G. syndetika and G. tomentella and 176B09 (Gm18) in G. soja, one of the extra pairs was associated with a pair of 45S rDNA sites related to possible differences in the intergenic spacers of rDNA sites. It was also observed that for Gm18, the map orientation sequencing appears to be inverted with respect to the chromosome morphology. The results suggest a break of synteny for Gm16 in G. syndetika and G. tomentella and for Gm18 in all analyzed species.A soja [G. max (L.) Merr.] é considerada a principal oleaginosa cultivada, tendo sido a primeira leguminosa a ser sequenciada, gerando informações genômicas importantes. O presente trabalho teve por finalidade realizar um estudo genômico comparativo, mediante a localização in situ de oito BACs (Bacterial Artificial Chromosomes) pertencentes aos grupos de ligação G (pseudomolécula 18, quatro BACs) e J (pseudomolécula 16, quatro BACs) de G. max (2n = 40) em cromossomos de G. soja (2n =40), G. syndetika (2n = 40), G. tabacina (2n = 80) e G. tomentella (2n = 78). As análises citogenéticas das sondas em G. max, G. soja e G. syndetika mostraram que sete BACs apresentaram marcação única em um ou dois pares cromossômicos, exceto para G. soja com o BAC 176B09 (três pares) e G. syndetika com o BAC93L17 (quatro pares). Para o BAC 173N15 em G. max e G. soja foram reveladas marcações de DNA repetitivo nas regiões centroméricas e pericentroméricas em todos os cromossomos de G. max e em 10 pares de G. soja, demonstrando diferenciação dessas regiões ao longo da evolução. Devido à presença do DNA repetitivo, esse BAC não foi hibridizado nas demais espécies. Em G. tabacina, dois BACs de cada grupo de ligação foram hibridizados em um par de cromossomos homeólogos equivalente, sendo visualizadas algumas marcas extras para os BACs do Gm18. Em relação a G. tomentella, apenas para os BACs de Gm16 (102N16 e 145O12) foi possível identificar o par cromossômico de homeologia em relação à G. max, observando-se contudo a presença de sinais extras também referentes a possíveis alterações, como duplicação e translocação. Os BACs de Gm18 (97L17 e 176B09) hibridizaram em diferentes cromossomos G. tomentella (dois pares cada), indicando prováveis rearranjos cromossômicos ao longo da evolução. Para os BACs 102N16 (Gm16) em G. tomentella, 93L17 (Gm18) em G. syndetika e G. tomentella e 176B09 (Gm18) em G. soja, um dos pares extras foi associado a um par de sítios de DNAr 45S decorrentes de possíveis divergências dos espaçadores intergênicos em sítios de DNAr. Foi observado também que para Gm18, a orientação do mapa de sequenciamento parece estar invertida em relação à morfologia cromossômica. De um modo geral, os resultados sugerem uma quebra de sintenia para Gm16 em G. syndetika, G. tomentella e para Gm18 em todas as espécies analisadas.Submitted by Mario BC (mario@bc.ufrpe.br) on 2019-11-28T14:40:16Z No. of bitstreams: 1 Ana Rafaela da Silva Oliveira.pdf: 1171715 bytes, checksum: 854cfe39c9fb18e68416e3ef3161c4c3 (MD5)Made available in DSpace on 2019-11-28T14:40:16Z (GMT). No. of bitstreams: 1 Ana Rafaela da Silva Oliveira.pdf: 1171715 bytes, checksum: 854cfe39c9fb18e68416e3ef3161c4c3 (MD5) Previous issue date: 2012-10-31Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqCoordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESapplication/pdfporUniversidade Federal Rural de PernambucoPrograma de Pós-Graduação em Melhoramento Genético de PlantasUFRPEBrasilDepartamento de AgronomiaCitogenéticaGlycine maxSojaMapa cromossômicoFITOTECNIA::MELHORAMENTO VEGETALMapeamento citogenético comparativo em espécies de Glycine Willdinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-6234655866848882505600600600600600-68005538799722292052615607299470131967-25559114369857136592075167498588264571info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRPEinstname:Universidade Federal Rural de Pernambuco (UFRPE)instacron:UFRPEORIGINALAna Rafaela da Silva Oliveira.pdfAna Rafaela da Silva Oliveira.pdfapplication/pdf1171715http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/8384/2/Ana+Rafaela+da+Silva+Oliveira.pdf854cfe39c9fb18e68416e3ef3161c4c3MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/8384/1/license.txtbd3efa91386c1718a7f26a329fdcb468MD51tede2/83842019-11-28 11:40:16.205oai:tede2: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.tede2.ufrpe.br:8080/tede/PUBhttp://www.tede2.ufrpe.br:8080/oai/requestbdtd@ufrpe.br ||bdtd@ufrpe.bropendoar:2024-05-28T12:36:54.038400Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)false
dc.title.por.fl_str_mv Mapeamento citogenético comparativo em espécies de Glycine Willd
title Mapeamento citogenético comparativo em espécies de Glycine Willd
spellingShingle Mapeamento citogenético comparativo em espécies de Glycine Willd
OLIVEIRA, Ana Rafaela da Silva
Citogenética
Glycine max
Soja
Mapa cromossômico
FITOTECNIA::MELHORAMENTO VEGETAL
title_short Mapeamento citogenético comparativo em espécies de Glycine Willd
title_full Mapeamento citogenético comparativo em espécies de Glycine Willd
title_fullStr Mapeamento citogenético comparativo em espécies de Glycine Willd
title_full_unstemmed Mapeamento citogenético comparativo em espécies de Glycine Willd
title_sort Mapeamento citogenético comparativo em espécies de Glycine Willd
author OLIVEIRA, Ana Rafaela da Silva
author_facet OLIVEIRA, Ana Rafaela da Silva
author_role author
dc.contributor.advisor1.fl_str_mv VIDAL, Ana Christina Brasileiro
dc.contributor.advisor-co1.fl_str_mv ISEPPON, Ana Maria Benko
dc.contributor.referee1.fl_str_mv BORTOLETI, Kyria Cilene de Andrade
dc.contributor.referee2.fl_str_mv HARAND, Andrea Pedrosa
dc.contributor.referee3.fl_str_mv CARVALHO, Reginaldo de
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/0352391353737690
dc.contributor.author.fl_str_mv OLIVEIRA, Ana Rafaela da Silva
contributor_str_mv VIDAL, Ana Christina Brasileiro
ISEPPON, Ana Maria Benko
BORTOLETI, Kyria Cilene de Andrade
HARAND, Andrea Pedrosa
CARVALHO, Reginaldo de
dc.subject.por.fl_str_mv Citogenética
Glycine max
Soja
Mapa cromossômico
topic Citogenética
Glycine max
Soja
Mapa cromossômico
FITOTECNIA::MELHORAMENTO VEGETAL
dc.subject.cnpq.fl_str_mv FITOTECNIA::MELHORAMENTO VEGETAL
description Soybean [G. max (L) Merr.] is considered the main cultivated oil plant and also the first oilseed crop and legume sequenced, generating important genomic information. The present work aimed to perform a comparative genomic study, through in situ localization of eight BACs (Bacterial Artificial Chromosomes) sequences belonging to linkage groups G (pseudomolecule 18, four BACs) and J (pseudomolecule 16, four BACs) from G. max (2n = 40) in G. soja (2n = 40), G. syndetika (2n = 40), G. tabacina (2n = 80) and G. tomentella (2n = 78) chromosomes. Cytogenetic analyzes using the probes in G. max, G. soja and G. syndetika showed that seven BACs yielded single markers in only one or two chromosome pairs, except for G. soja with the BAC 176B09 (three pairs) and G. syndetika with BAC93L17 (four pairs). In G. max and G. soja, only 173N15 revealed a DNA repetitive mark when hybridized in situ in pericentromeric and centromeric regions in all chromosomes of G. max and 10 pairs of G. soja, showing differentiation of these regions throughout evolution. Due to the presence of repetitive DNA, the BAC has not been hybridized in the other species.In G. tabacina two BACs of each linkage group hybridized on a pair of homeologous chromosomes, equivalent being viewed some extra markers viewed for the Gm18 BACs. In relation to G. tomentella, only for the BACs of Gm16 (102N16 and 145O12) there was a conservation of synteny as compared with G. max, observing however the presence of some extra signals, such as duplication and translocation. The BACs of Gm18 (97L17 and 176B09) hybridized on different chromosomes (two pairs each) in G. tomentella, what indicate probable chromosomal rearrangements during evolution. For BACs 102N16 (Gm16) in G. tomentella, 93L17 (Gm18) in G. syndetika and G. tomentella and 176B09 (Gm18) in G. soja, one of the extra pairs was associated with a pair of 45S rDNA sites related to possible differences in the intergenic spacers of rDNA sites. It was also observed that for Gm18, the map orientation sequencing appears to be inverted with respect to the chromosome morphology. The results suggest a break of synteny for Gm16 in G. syndetika and G. tomentella and for Gm18 in all analyzed species.
publishDate 2012
dc.date.issued.fl_str_mv 2012-10-31
dc.date.accessioned.fl_str_mv 2019-11-28T14:40:16Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv OLIVEIRA, Ana Rafaela da Silva. Mapeamento citogenético comparativo em espécies de Glycine Willd. 2012. 73 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/8384
identifier_str_mv OLIVEIRA, Ana Rafaela da Silva. Mapeamento citogenético comparativo em espécies de Glycine Willd. 2012. 73 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
url http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/8384
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publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
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