Novos begomovírus associados a plantas daninhas no nordeste do Brasil

Detalhes bibliográficos
Autor(a) principal: NASCIMENTO, Liliane Dias
Data de Publicação: 2003
Tipo de documento: Tese
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6610
Resumo: The Begomovirus (family Geminiviridae) are characterized by infecting dicotyledonous plants, present twinned icosahedral particles with genomes composed of one or two components of circular single-stranded DNA (DNA-A and DNA-B). In addition to cultivated plants, the begomoviruses are also associated with a wide range of weeds. This study aimed to characterize the begomoviruses associated with weed families Malvaceae (Herissantia crispa, Waltheria indica, Sidastrum paniculatum, Sida rhombifolia e Triumfetta semitriloba), Solanaceae (Physalis sp.) and Lamiaceae (Hyptis sp.) In northeastern Brazil to assess their diversity and importance as sources of new virus to cultivated plants. Samples of weeds with symptoms typical of begomovirus infection were collected in the states of Alagoas, Pernambuco and Bahia during the years 2010-2012. We obtained a total of 28 genomic components (18 DNA-A and 10 DNA-B). Analysis of the sequences indicated the presence of eight species of begomovirus, six new species (HeYMV, TrYMV, PaYNV, PhYSV, HyRMV1 and HyRMV2). In phylogenetic analyzes between viruses obtained malvaceous weeds. indicate that all new species clustered with Brazilian begomoviruses. Evidence of recombination were detected manifold where the begomoviruses from Sida spp. and tomato were identified as parents. In weed Hyptis sp. and Physalis sp. Sequence analyzes indicated the presence of three new species of begomoviruses, the two found in the same sample Hyptis sp. (Mixed infection) and another found initially Physalis sp. and subsequently detected in Hyptis sp. In phylogenetic analyzes of these three new species formed a single monophyletic branch. The analyzes showed strong evidence of recombination between HyRMV1 and HyRMV2, and the like parental HyRMV1. The ToRMV was identified as a possible parental species HyRMV1 and PhYSV. Therefore, these results indicate that the weeds are important reservoirs of begomoviruses and that recombination events have apparently contributed to the emergence of new species in some hosts.
id URPE_ef1c1de204ee60c24bb4225a9ec6c69a
oai_identifier_str oai:tede2:tede2/6610
network_acronym_str URPE
network_name_str Biblioteca Digital de Teses e Dissertações da UFRPE
repository_id_str
spelling LIMA, Gaus Silvestre de AndradeASSUNÇÃO, Iraildes PereiraSILVA, Sarah Jaqueline Cavalcanti daRIFFEL, AlessandoTIRONI, Siumar Pedrohttp://lattes.cnpq.br/5430165340911286NASCIMENTO, Liliane Dias2017-03-20T13:46:53Z2003-02-28NASCIMENTO, Liliane Dias. Novos begomovírus associados a plantas daninhas no nordeste do Brasil. 2003. 90 f. Tese (Programa de Pós-Graduação em Fitopatologia) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6610The Begomovirus (family Geminiviridae) are characterized by infecting dicotyledonous plants, present twinned icosahedral particles with genomes composed of one or two components of circular single-stranded DNA (DNA-A and DNA-B). In addition to cultivated plants, the begomoviruses are also associated with a wide range of weeds. This study aimed to characterize the begomoviruses associated with weed families Malvaceae (Herissantia crispa, Waltheria indica, Sidastrum paniculatum, Sida rhombifolia e Triumfetta semitriloba), Solanaceae (Physalis sp.) and Lamiaceae (Hyptis sp.) In northeastern Brazil to assess their diversity and importance as sources of new virus to cultivated plants. Samples of weeds with symptoms typical of begomovirus infection were collected in the states of Alagoas, Pernambuco and Bahia during the years 2010-2012. We obtained a total of 28 genomic components (18 DNA-A and 10 DNA-B). Analysis of the sequences indicated the presence of eight species of begomovirus, six new species (HeYMV, TrYMV, PaYNV, PhYSV, HyRMV1 and HyRMV2). In phylogenetic analyzes between viruses obtained malvaceous weeds. indicate that all new species clustered with Brazilian begomoviruses. Evidence of recombination were detected manifold where the begomoviruses from Sida spp. and tomato were identified as parents. In weed Hyptis sp. and Physalis sp. Sequence analyzes indicated the presence of three new species of begomoviruses, the two found in the same sample Hyptis sp. (Mixed infection) and another found initially Physalis sp. and subsequently detected in Hyptis sp. In phylogenetic analyzes of these three new species formed a single monophyletic branch. The analyzes showed strong evidence of recombination between HyRMV1 and HyRMV2, and the like parental HyRMV1. The ToRMV was identified as a possible parental species HyRMV1 and PhYSV. Therefore, these results indicate that the weeds are important reservoirs of begomoviruses and that recombination events have apparently contributed to the emergence of new species in some hosts.Os Begomovirus (família Geminiviridae) são caracterizados por infectarem plantas dicotiledôneas, apresentarem partículas icosaédricas geminadas, com genoma composto por um ou dois componentes de DNA circular de fita simples (DNA-A e DNA-B). Além de plantas cultivadas, os begomovírus estão também associados a uma ampla gama de plantas daninhas. Esse estudo teve como objetivo caracterizar os begomovírus associados a plantas daninhas das famílias Malvaceae (Herissantia crispa, Waltheria indica, Sidastrum paniculatum, Sida rhombifolia, Triumfetta semitriloba), Solanaceae Physalis sp.) e Lamiaceae (Hyptis sp.) no nordeste brasileiro para avaliar sua diversidade e importância como fontes de novos vírus para plantas cultivadas. As amostras de plantas daninhas com sintomas típicos de infecção por begomovírus foram coletadas nos estados de Alagoas, Pernambuco e Bahia durante os anos de 2010 a 2012. Foram obtidos um total de 28 componentes genômicos (18 DNA-A e 10 DNA-B). Análises das sequências indicaram a presença de oito espécies de begomovírus, sendo 6 novas espécies (HeYMV, TrYMV, PaYNV, PhYSV, HyRMV1 e HyRMV2). Nas análises filogenéticas entre os vírus obtidos das malváceas daninhas. indicam que todas as novas espécies se agruparam com begomovírus brasileiros. Evidências múltiplas de recombinação foram detectadas onde os begomovírus provenientes de Sida spp. e do tomateiro foram identificados como parentais. Nas daninhas Hyptis sp. e Physalis sp. análises das sequências indicaram a presença de três novas espécies de begomovírus, duas encontradas numa mesma amostra de Hyptis sp. (infecção mista) e a outra encontrada inicialmente em Physalis sp. e posteriormente detectada em Hyptis sp. Nas análises filogenéticas essas três novas espécies formaram um único ramo monofilético. As análises de recombinação indicaram uma forte evidência de recombinação entre HyRMV1 e HyRMV2, tendo o HyRMV1 como parental. O ToRMV foi identificado como possível parental para as espécies HyRMV1 e PhYSV. Portanto, esses resultados indicam que as plantas daninhas constituem importantes reservatórios de begomovírus e que eventos de recombinação tem aparentemente contribuído para o surgimento de novas espécies nessas hospedeiras.Submitted by (lucia.rodrigues@ufrpe.br) on 2017-03-20T13:46:53Z No. of bitstreams: 1 Liliane Dias Nascimento.pdf: 4084810 bytes, checksum: 75a96b10bb37fdfc009fceb0465dd541 (MD5)Made available in DSpace on 2017-03-20T13:46:53Z (GMT). No. of bitstreams: 1 Liliane Dias Nascimento.pdf: 4084810 bytes, checksum: 75a96b10bb37fdfc009fceb0465dd541 (MD5) Previous issue date: 2003-02-28application/pdfporUniversidade Federal Rural de PernambucoPrograma de Pós-Graduação em FitopatologiaUFRPEBrasilDepartamento de AgronomiaGeminivírusPhysalis sp.Hyptis sp.Malváceas daninhasMalvaceous weedFITOSSANIDADE::FITOPATOLOGIANovos begomovírus associados a plantas daninhas no nordeste do Brasilinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis1343367238723626701600600600-6800553879972229205-6207026424523013504info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRPEinstname:Universidade Federal Rural de Pernambuco (UFRPE)instacron:UFRPELICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/6610/1/license.txtbd3efa91386c1718a7f26a329fdcb468MD51ORIGINALLiliane Dias Nascimento.pdfLiliane Dias Nascimento.pdfapplication/pdf4084810http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/6610/2/Liliane+Dias+Nascimento.pdf75a96b10bb37fdfc009fceb0465dd541MD52tede2/66102017-03-20 10:46:53.324oai:tede2: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.tede2.ufrpe.br:8080/tede/PUBhttp://www.tede2.ufrpe.br:8080/oai/requestbdtd@ufrpe.br ||bdtd@ufrpe.bropendoar:2017-03-20T13:46:53Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)false
dc.title.por.fl_str_mv Novos begomovírus associados a plantas daninhas no nordeste do Brasil
title Novos begomovírus associados a plantas daninhas no nordeste do Brasil
spellingShingle Novos begomovírus associados a plantas daninhas no nordeste do Brasil
NASCIMENTO, Liliane Dias
Geminivírus
Physalis sp.
Hyptis sp.
Malváceas daninhas
Malvaceous weed
FITOSSANIDADE::FITOPATOLOGIA
title_short Novos begomovírus associados a plantas daninhas no nordeste do Brasil
title_full Novos begomovírus associados a plantas daninhas no nordeste do Brasil
title_fullStr Novos begomovírus associados a plantas daninhas no nordeste do Brasil
title_full_unstemmed Novos begomovírus associados a plantas daninhas no nordeste do Brasil
title_sort Novos begomovírus associados a plantas daninhas no nordeste do Brasil
author NASCIMENTO, Liliane Dias
author_facet NASCIMENTO, Liliane Dias
author_role author
dc.contributor.advisor1.fl_str_mv LIMA, Gaus Silvestre de Andrade
dc.contributor.advisor-co1.fl_str_mv ASSUNÇÃO, Iraildes Pereira
dc.contributor.advisor-co2.fl_str_mv SILVA, Sarah Jaqueline Cavalcanti da
dc.contributor.referee1.fl_str_mv RIFFEL, Alessando
dc.contributor.referee2.fl_str_mv TIRONI, Siumar Pedro
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/5430165340911286
dc.contributor.author.fl_str_mv NASCIMENTO, Liliane Dias
contributor_str_mv LIMA, Gaus Silvestre de Andrade
ASSUNÇÃO, Iraildes Pereira
SILVA, Sarah Jaqueline Cavalcanti da
RIFFEL, Alessando
TIRONI, Siumar Pedro
dc.subject.por.fl_str_mv Geminivírus
Physalis sp.
Hyptis sp.
Malváceas daninhas
Malvaceous weed
topic Geminivírus
Physalis sp.
Hyptis sp.
Malváceas daninhas
Malvaceous weed
FITOSSANIDADE::FITOPATOLOGIA
dc.subject.cnpq.fl_str_mv FITOSSANIDADE::FITOPATOLOGIA
description The Begomovirus (family Geminiviridae) are characterized by infecting dicotyledonous plants, present twinned icosahedral particles with genomes composed of one or two components of circular single-stranded DNA (DNA-A and DNA-B). In addition to cultivated plants, the begomoviruses are also associated with a wide range of weeds. This study aimed to characterize the begomoviruses associated with weed families Malvaceae (Herissantia crispa, Waltheria indica, Sidastrum paniculatum, Sida rhombifolia e Triumfetta semitriloba), Solanaceae (Physalis sp.) and Lamiaceae (Hyptis sp.) In northeastern Brazil to assess their diversity and importance as sources of new virus to cultivated plants. Samples of weeds with symptoms typical of begomovirus infection were collected in the states of Alagoas, Pernambuco and Bahia during the years 2010-2012. We obtained a total of 28 genomic components (18 DNA-A and 10 DNA-B). Analysis of the sequences indicated the presence of eight species of begomovirus, six new species (HeYMV, TrYMV, PaYNV, PhYSV, HyRMV1 and HyRMV2). In phylogenetic analyzes between viruses obtained malvaceous weeds. indicate that all new species clustered with Brazilian begomoviruses. Evidence of recombination were detected manifold where the begomoviruses from Sida spp. and tomato were identified as parents. In weed Hyptis sp. and Physalis sp. Sequence analyzes indicated the presence of three new species of begomoviruses, the two found in the same sample Hyptis sp. (Mixed infection) and another found initially Physalis sp. and subsequently detected in Hyptis sp. In phylogenetic analyzes of these three new species formed a single monophyletic branch. The analyzes showed strong evidence of recombination between HyRMV1 and HyRMV2, and the like parental HyRMV1. The ToRMV was identified as a possible parental species HyRMV1 and PhYSV. Therefore, these results indicate that the weeds are important reservoirs of begomoviruses and that recombination events have apparently contributed to the emergence of new species in some hosts.
publishDate 2003
dc.date.issued.fl_str_mv 2003-02-28
dc.date.accessioned.fl_str_mv 2017-03-20T13:46:53Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv NASCIMENTO, Liliane Dias. Novos begomovírus associados a plantas daninhas no nordeste do Brasil. 2003. 90 f. Tese (Programa de Pós-Graduação em Fitopatologia) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6610
identifier_str_mv NASCIMENTO, Liliane Dias. Novos begomovírus associados a plantas daninhas no nordeste do Brasil. 2003. 90 f. Tese (Programa de Pós-Graduação em Fitopatologia) - Universidade Federal Rural de Pernambuco, Recife.
url http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6610
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 1343367238723626701
dc.relation.confidence.fl_str_mv 600
600
600
dc.relation.department.fl_str_mv -6800553879972229205
dc.relation.cnpq.fl_str_mv -6207026424523013504
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Fitopatologia
dc.publisher.initials.fl_str_mv UFRPE
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Departamento de Agronomia
publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da UFRPE
instname:Universidade Federal Rural de Pernambuco (UFRPE)
instacron:UFRPE
instname_str Universidade Federal Rural de Pernambuco (UFRPE)
instacron_str UFRPE
institution UFRPE
reponame_str Biblioteca Digital de Teses e Dissertações da UFRPE
collection Biblioteca Digital de Teses e Dissertações da UFRPE
bitstream.url.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/6610/1/license.txt
http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/6610/2/Liliane+Dias+Nascimento.pdf
bitstream.checksum.fl_str_mv bd3efa91386c1718a7f26a329fdcb468
75a96b10bb37fdfc009fceb0465dd541
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)
repository.mail.fl_str_mv bdtd@ufrpe.br ||bdtd@ufrpe.br
_version_ 1800311471952887808