Genetic diversity of American wild rice species

Detalhes bibliográficos
Autor(a) principal: Veasey, Elizabeth Ann
Data de Publicação: 2011
Outros Autores: Bressan, Eduardo de Andrade, Zucchi, Maria Imaculada, Vencovsky, Roland, Cardim, Daruska Cavalcante, Silva, Rainério Meireles da
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: https://www.revistas.usp.br/sa/article/view/22690
Resumo: Studies on genetic diversity and genetic structure of natural populations are important in order to define strategies for in situ and ex situ conservation actions and for plant pre-breeding programs. Aiming to assess the genetic diversity and genetic structure of three wild American Oryza species with isozyme markers, 14 populations of the diploid O. glumaepatula (AglAgl), 11 populations of the tetraploid O. grandiglumis (CCDD) and five populations of the also tetraploid O. latifolia (CCDD) were studied. They were all originated from Rio Paraguay hydrographic basin and the Amazon. Four enzymes were used and they gave 40 polymorphic bands. The most polymorphic species was O. glumaepatula, followed by O. latifolia and O. grandiglumis. A cluster analysis with the Jaccard similarity coefficient separated the diploid from the two tetraploid species, and also the two tetraploid species. This separation was also evident on a scatter plot from a principal component analysis, suggesting that they should be treated as two separate species, although further studies are necessary to provide support for this affirmative. The AMOVA analyses showed a high intrapopulational variability for O. latifolia (67.6%) and O. grandiglumis (52.2%), when compared to their interpopulational variability (32.4% and 47.8%, respectively), which suggests the hypothesis of a higher degree of outcrossing events within these species. When studying the correlation between the Jaccard dissimilarity coefficient and geographic distances, a spatial genetic structure was observed for O. glumaepatula only. These results are important for defining strategies of both in situ and ex situ conservation.
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spelling Genetic diversity of American wild rice species Oryza glumaepatulaO. latifoliaO. grandiglumisAmazongenetic structure Studies on genetic diversity and genetic structure of natural populations are important in order to define strategies for in situ and ex situ conservation actions and for plant pre-breeding programs. Aiming to assess the genetic diversity and genetic structure of three wild American Oryza species with isozyme markers, 14 populations of the diploid O. glumaepatula (AglAgl), 11 populations of the tetraploid O. grandiglumis (CCDD) and five populations of the also tetraploid O. latifolia (CCDD) were studied. They were all originated from Rio Paraguay hydrographic basin and the Amazon. Four enzymes were used and they gave 40 polymorphic bands. The most polymorphic species was O. glumaepatula, followed by O. latifolia and O. grandiglumis. A cluster analysis with the Jaccard similarity coefficient separated the diploid from the two tetraploid species, and also the two tetraploid species. This separation was also evident on a scatter plot from a principal component analysis, suggesting that they should be treated as two separate species, although further studies are necessary to provide support for this affirmative. The AMOVA analyses showed a high intrapopulational variability for O. latifolia (67.6%) and O. grandiglumis (52.2%), when compared to their interpopulational variability (32.4% and 47.8%, respectively), which suggests the hypothesis of a higher degree of outcrossing events within these species. When studying the correlation between the Jaccard dissimilarity coefficient and geographic distances, a spatial genetic structure was observed for O. glumaepatula only. These results are important for defining strategies of both in situ and ex situ conservation. Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz2011-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/sa/article/view/2269010.1590/S0103-90162011000400008Scientia Agricola; v. 68 n. 4 (2011); 440-446Scientia Agricola; Vol. 68 Núm. 4 (2011); 440-446Scientia Agricola; Vol. 68 No. 4 (2011); 440-4461678-992X0103-9016reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USPenghttps://www.revistas.usp.br/sa/article/view/22690/24714Copyright (c) 2015 Scientia Agricolainfo:eu-repo/semantics/openAccessVeasey, Elizabeth AnnBressan, Eduardo de AndradeZucchi, Maria ImaculadaVencovsky, RolandCardim, Daruska CavalcanteSilva, Rainério Meireles da2015-07-07T19:12:06Zoai:revistas.usp.br:article/22690Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2015-07-07T19:12:06Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Genetic diversity of American wild rice species
title Genetic diversity of American wild rice species
spellingShingle Genetic diversity of American wild rice species
Veasey, Elizabeth Ann
Oryza glumaepatula
O. latifolia
O. grandiglumis
Amazon
genetic structure
title_short Genetic diversity of American wild rice species
title_full Genetic diversity of American wild rice species
title_fullStr Genetic diversity of American wild rice species
title_full_unstemmed Genetic diversity of American wild rice species
title_sort Genetic diversity of American wild rice species
author Veasey, Elizabeth Ann
author_facet Veasey, Elizabeth Ann
Bressan, Eduardo de Andrade
Zucchi, Maria Imaculada
Vencovsky, Roland
Cardim, Daruska Cavalcante
Silva, Rainério Meireles da
author_role author
author2 Bressan, Eduardo de Andrade
Zucchi, Maria Imaculada
Vencovsky, Roland
Cardim, Daruska Cavalcante
Silva, Rainério Meireles da
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Veasey, Elizabeth Ann
Bressan, Eduardo de Andrade
Zucchi, Maria Imaculada
Vencovsky, Roland
Cardim, Daruska Cavalcante
Silva, Rainério Meireles da
dc.subject.por.fl_str_mv Oryza glumaepatula
O. latifolia
O. grandiglumis
Amazon
genetic structure
topic Oryza glumaepatula
O. latifolia
O. grandiglumis
Amazon
genetic structure
description Studies on genetic diversity and genetic structure of natural populations are important in order to define strategies for in situ and ex situ conservation actions and for plant pre-breeding programs. Aiming to assess the genetic diversity and genetic structure of three wild American Oryza species with isozyme markers, 14 populations of the diploid O. glumaepatula (AglAgl), 11 populations of the tetraploid O. grandiglumis (CCDD) and five populations of the also tetraploid O. latifolia (CCDD) were studied. They were all originated from Rio Paraguay hydrographic basin and the Amazon. Four enzymes were used and they gave 40 polymorphic bands. The most polymorphic species was O. glumaepatula, followed by O. latifolia and O. grandiglumis. A cluster analysis with the Jaccard similarity coefficient separated the diploid from the two tetraploid species, and also the two tetraploid species. This separation was also evident on a scatter plot from a principal component analysis, suggesting that they should be treated as two separate species, although further studies are necessary to provide support for this affirmative. The AMOVA analyses showed a high intrapopulational variability for O. latifolia (67.6%) and O. grandiglumis (52.2%), when compared to their interpopulational variability (32.4% and 47.8%, respectively), which suggests the hypothesis of a higher degree of outcrossing events within these species. When studying the correlation between the Jaccard dissimilarity coefficient and geographic distances, a spatial genetic structure was observed for O. glumaepatula only. These results are important for defining strategies of both in situ and ex situ conservation.
publishDate 2011
dc.date.none.fl_str_mv 2011-08-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/sa/article/view/22690
10.1590/S0103-90162011000400008
url https://www.revistas.usp.br/sa/article/view/22690
identifier_str_mv 10.1590/S0103-90162011000400008
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/sa/article/view/22690/24714
dc.rights.driver.fl_str_mv Copyright (c) 2015 Scientia Agricola
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2015 Scientia Agricola
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz
publisher.none.fl_str_mv Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz
dc.source.none.fl_str_mv Scientia Agricola; v. 68 n. 4 (2011); 440-446
Scientia Agricola; Vol. 68 Núm. 4 (2011); 440-446
Scientia Agricola; Vol. 68 No. 4 (2011); 440-446
1678-992X
0103-9016
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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