Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil

Detalhes bibliográficos
Autor(a) principal: Lopez,Bruna Daniela Ortiz
Data de Publicação: 2022
Outros Autores: Teixeira,Anita Fernanda dos Santos, Michel,Daniele Cabral, Guimarães,Amanda Azarias, Costa,Amanda Monique da, Costa,Juliana Santos, Pereira,Marcela de Souza, Duarte,Bárbara Luyse Marques, Moreira,Fatima Maria de Souza
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002
Resumo: ABSTRACT: Identification and selection of nitrogen-fixing bacterial strains for inoculation into native leguminous tree species can assist in the recovery of degraded areas. Additionally, native strains from these areas are genetic resources adapted to these conditions and are thus suitable for selection. The aim of this study was to symbiotically and genetically characterize 18 bacterial strains from the Rhizobium and Bradyrhizobium genera isolated from Machaerium nyctitans, Platypodium elegans, and Ormosia arborea grown in a nursery in an iron mining area. Three experiments were conducted under axenic conditions in a greenhouse. The nodulation capacity of the strains was evaluated by the number (NN) and dry matter (NDM) of nodules. Symbiotic efficiency was evaluated based on the following parameters: SPAD index (SPAD), shoot dry matter (SDM), root dry matter (RDM), and total dry matter (TDM) of the plants, relative efficiency (RE), shoot nitrogen content (SNC), and total nitrogen content in the plant (TNC). The atpD and gyrB housekeeping genes and the nifH gene were sequenced for phylogenetic analysis, and the nodC and nodD symbiotic genes of the strains were amplified. Out of the 18 strains, 16 were authenticated by nodulation capacity in the species of origin. The SPAD variable allowed for the detection of differences between treatments before the SDM. Additionally, the SPAD index showed correlation with TNC, and the strain Bradyrhizobium sp., UFLA01-839, which may represent a new species, was outstanding in Machaerium nyctitans. The nifH, nodD, and nodC genes were detected in UFLA01-839.
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spelling Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazilhousekeeping genessymbiotic genesauthenticationsymbiotic efficiencyABSTRACT: Identification and selection of nitrogen-fixing bacterial strains for inoculation into native leguminous tree species can assist in the recovery of degraded areas. Additionally, native strains from these areas are genetic resources adapted to these conditions and are thus suitable for selection. The aim of this study was to symbiotically and genetically characterize 18 bacterial strains from the Rhizobium and Bradyrhizobium genera isolated from Machaerium nyctitans, Platypodium elegans, and Ormosia arborea grown in a nursery in an iron mining area. Three experiments were conducted under axenic conditions in a greenhouse. The nodulation capacity of the strains was evaluated by the number (NN) and dry matter (NDM) of nodules. Symbiotic efficiency was evaluated based on the following parameters: SPAD index (SPAD), shoot dry matter (SDM), root dry matter (RDM), and total dry matter (TDM) of the plants, relative efficiency (RE), shoot nitrogen content (SNC), and total nitrogen content in the plant (TNC). The atpD and gyrB housekeeping genes and the nifH gene were sequenced for phylogenetic analysis, and the nodC and nodD symbiotic genes of the strains were amplified. Out of the 18 strains, 16 were authenticated by nodulation capacity in the species of origin. The SPAD variable allowed for the detection of differences between treatments before the SDM. Additionally, the SPAD index showed correlation with TNC, and the strain Bradyrhizobium sp., UFLA01-839, which may represent a new species, was outstanding in Machaerium nyctitans. The nifH, nodD, and nodC genes were detected in UFLA01-839.Escola Superior de Agricultura "Luiz de Queiroz"2022-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002Scientia Agricola v.79 n.2 2022reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/1678-992x-2020-0238info:eu-repo/semantics/openAccessLopez,Bruna Daniela OrtizTeixeira,Anita Fernanda dos SantosMichel,Daniele CabralGuimarães,Amanda AzariasCosta,Amanda Monique daCosta,Juliana SantosPereira,Marcela de SouzaDuarte,Bárbara Luyse MarquesMoreira,Fatima Maria de Souzaeng2021-05-14T00:00:00Zoai:scielo:S0103-90162022000201002Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2021-05-14T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
title Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
spellingShingle Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
Lopez,Bruna Daniela Ortiz
housekeeping genes
symbiotic genes
authentication
symbiotic efficiency
title_short Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
title_full Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
title_fullStr Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
title_full_unstemmed Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
title_sort Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
author Lopez,Bruna Daniela Ortiz
author_facet Lopez,Bruna Daniela Ortiz
Teixeira,Anita Fernanda dos Santos
Michel,Daniele Cabral
Guimarães,Amanda Azarias
Costa,Amanda Monique da
Costa,Juliana Santos
Pereira,Marcela de Souza
Duarte,Bárbara Luyse Marques
Moreira,Fatima Maria de Souza
author_role author
author2 Teixeira,Anita Fernanda dos Santos
Michel,Daniele Cabral
Guimarães,Amanda Azarias
Costa,Amanda Monique da
Costa,Juliana Santos
Pereira,Marcela de Souza
Duarte,Bárbara Luyse Marques
Moreira,Fatima Maria de Souza
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Lopez,Bruna Daniela Ortiz
Teixeira,Anita Fernanda dos Santos
Michel,Daniele Cabral
Guimarães,Amanda Azarias
Costa,Amanda Monique da
Costa,Juliana Santos
Pereira,Marcela de Souza
Duarte,Bárbara Luyse Marques
Moreira,Fatima Maria de Souza
dc.subject.por.fl_str_mv housekeeping genes
symbiotic genes
authentication
symbiotic efficiency
topic housekeeping genes
symbiotic genes
authentication
symbiotic efficiency
description ABSTRACT: Identification and selection of nitrogen-fixing bacterial strains for inoculation into native leguminous tree species can assist in the recovery of degraded areas. Additionally, native strains from these areas are genetic resources adapted to these conditions and are thus suitable for selection. The aim of this study was to symbiotically and genetically characterize 18 bacterial strains from the Rhizobium and Bradyrhizobium genera isolated from Machaerium nyctitans, Platypodium elegans, and Ormosia arborea grown in a nursery in an iron mining area. Three experiments were conducted under axenic conditions in a greenhouse. The nodulation capacity of the strains was evaluated by the number (NN) and dry matter (NDM) of nodules. Symbiotic efficiency was evaluated based on the following parameters: SPAD index (SPAD), shoot dry matter (SDM), root dry matter (RDM), and total dry matter (TDM) of the plants, relative efficiency (RE), shoot nitrogen content (SNC), and total nitrogen content in the plant (TNC). The atpD and gyrB housekeeping genes and the nifH gene were sequenced for phylogenetic analysis, and the nodC and nodD symbiotic genes of the strains were amplified. Out of the 18 strains, 16 were authenticated by nodulation capacity in the species of origin. The SPAD variable allowed for the detection of differences between treatments before the SDM. Additionally, the SPAD index showed correlation with TNC, and the strain Bradyrhizobium sp., UFLA01-839, which may represent a new species, was outstanding in Machaerium nyctitans. The nifH, nodD, and nodC genes were detected in UFLA01-839.
publishDate 2022
dc.date.none.fl_str_mv 2022-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-992x-2020-0238
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
dc.source.none.fl_str_mv Scientia Agricola v.79 n.2 2022
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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