Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Scientia Agrícola (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002 |
Resumo: | ABSTRACT: Identification and selection of nitrogen-fixing bacterial strains for inoculation into native leguminous tree species can assist in the recovery of degraded areas. Additionally, native strains from these areas are genetic resources adapted to these conditions and are thus suitable for selection. The aim of this study was to symbiotically and genetically characterize 18 bacterial strains from the Rhizobium and Bradyrhizobium genera isolated from Machaerium nyctitans, Platypodium elegans, and Ormosia arborea grown in a nursery in an iron mining area. Three experiments were conducted under axenic conditions in a greenhouse. The nodulation capacity of the strains was evaluated by the number (NN) and dry matter (NDM) of nodules. Symbiotic efficiency was evaluated based on the following parameters: SPAD index (SPAD), shoot dry matter (SDM), root dry matter (RDM), and total dry matter (TDM) of the plants, relative efficiency (RE), shoot nitrogen content (SNC), and total nitrogen content in the plant (TNC). The atpD and gyrB housekeeping genes and the nifH gene were sequenced for phylogenetic analysis, and the nodC and nodD symbiotic genes of the strains were amplified. Out of the 18 strains, 16 were authenticated by nodulation capacity in the species of origin. The SPAD variable allowed for the detection of differences between treatments before the SDM. Additionally, the SPAD index showed correlation with TNC, and the strain Bradyrhizobium sp., UFLA01-839, which may represent a new species, was outstanding in Machaerium nyctitans. The nifH, nodD, and nodC genes were detected in UFLA01-839. |
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Scientia Agrícola (Online) |
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Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazilhousekeeping genessymbiotic genesauthenticationsymbiotic efficiencyABSTRACT: Identification and selection of nitrogen-fixing bacterial strains for inoculation into native leguminous tree species can assist in the recovery of degraded areas. Additionally, native strains from these areas are genetic resources adapted to these conditions and are thus suitable for selection. The aim of this study was to symbiotically and genetically characterize 18 bacterial strains from the Rhizobium and Bradyrhizobium genera isolated from Machaerium nyctitans, Platypodium elegans, and Ormosia arborea grown in a nursery in an iron mining area. Three experiments were conducted under axenic conditions in a greenhouse. The nodulation capacity of the strains was evaluated by the number (NN) and dry matter (NDM) of nodules. Symbiotic efficiency was evaluated based on the following parameters: SPAD index (SPAD), shoot dry matter (SDM), root dry matter (RDM), and total dry matter (TDM) of the plants, relative efficiency (RE), shoot nitrogen content (SNC), and total nitrogen content in the plant (TNC). The atpD and gyrB housekeeping genes and the nifH gene were sequenced for phylogenetic analysis, and the nodC and nodD symbiotic genes of the strains were amplified. Out of the 18 strains, 16 were authenticated by nodulation capacity in the species of origin. The SPAD variable allowed for the detection of differences between treatments before the SDM. Additionally, the SPAD index showed correlation with TNC, and the strain Bradyrhizobium sp., UFLA01-839, which may represent a new species, was outstanding in Machaerium nyctitans. The nifH, nodD, and nodC genes were detected in UFLA01-839.Escola Superior de Agricultura "Luiz de Queiroz"2022-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002Scientia Agricola v.79 n.2 2022reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/1678-992x-2020-0238info:eu-repo/semantics/openAccessLopez,Bruna Daniela OrtizTeixeira,Anita Fernanda dos SantosMichel,Daniele CabralGuimarães,Amanda AzariasCosta,Amanda Monique daCosta,Juliana SantosPereira,Marcela de SouzaDuarte,Bárbara Luyse MarquesMoreira,Fatima Maria de Souzaeng2021-05-14T00:00:00Zoai:scielo:S0103-90162022000201002Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2021-05-14T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
title |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
spellingShingle |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil Lopez,Bruna Daniela Ortiz housekeeping genes symbiotic genes authentication symbiotic efficiency |
title_short |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
title_full |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
title_fullStr |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
title_full_unstemmed |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
title_sort |
Genetic and symbiotic characterization of rhizobia nodulating legumes in a mining area in southeast Brazil |
author |
Lopez,Bruna Daniela Ortiz |
author_facet |
Lopez,Bruna Daniela Ortiz Teixeira,Anita Fernanda dos Santos Michel,Daniele Cabral Guimarães,Amanda Azarias Costa,Amanda Monique da Costa,Juliana Santos Pereira,Marcela de Souza Duarte,Bárbara Luyse Marques Moreira,Fatima Maria de Souza |
author_role |
author |
author2 |
Teixeira,Anita Fernanda dos Santos Michel,Daniele Cabral Guimarães,Amanda Azarias Costa,Amanda Monique da Costa,Juliana Santos Pereira,Marcela de Souza Duarte,Bárbara Luyse Marques Moreira,Fatima Maria de Souza |
author2_role |
author author author author author author author author |
dc.contributor.author.fl_str_mv |
Lopez,Bruna Daniela Ortiz Teixeira,Anita Fernanda dos Santos Michel,Daniele Cabral Guimarães,Amanda Azarias Costa,Amanda Monique da Costa,Juliana Santos Pereira,Marcela de Souza Duarte,Bárbara Luyse Marques Moreira,Fatima Maria de Souza |
dc.subject.por.fl_str_mv |
housekeeping genes symbiotic genes authentication symbiotic efficiency |
topic |
housekeeping genes symbiotic genes authentication symbiotic efficiency |
description |
ABSTRACT: Identification and selection of nitrogen-fixing bacterial strains for inoculation into native leguminous tree species can assist in the recovery of degraded areas. Additionally, native strains from these areas are genetic resources adapted to these conditions and are thus suitable for selection. The aim of this study was to symbiotically and genetically characterize 18 bacterial strains from the Rhizobium and Bradyrhizobium genera isolated from Machaerium nyctitans, Platypodium elegans, and Ormosia arborea grown in a nursery in an iron mining area. Three experiments were conducted under axenic conditions in a greenhouse. The nodulation capacity of the strains was evaluated by the number (NN) and dry matter (NDM) of nodules. Symbiotic efficiency was evaluated based on the following parameters: SPAD index (SPAD), shoot dry matter (SDM), root dry matter (RDM), and total dry matter (TDM) of the plants, relative efficiency (RE), shoot nitrogen content (SNC), and total nitrogen content in the plant (TNC). The atpD and gyrB housekeeping genes and the nifH gene were sequenced for phylogenetic analysis, and the nodC and nodD symbiotic genes of the strains were amplified. Out of the 18 strains, 16 were authenticated by nodulation capacity in the species of origin. The SPAD variable allowed for the detection of differences between treatments before the SDM. Additionally, the SPAD index showed correlation with TNC, and the strain Bradyrhizobium sp., UFLA01-839, which may represent a new species, was outstanding in Machaerium nyctitans. The nifH, nodD, and nodC genes were detected in UFLA01-839. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162022000201002 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/1678-992x-2020-0238 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
dc.source.none.fl_str_mv |
Scientia Agricola v.79 n.2 2022 reponame:Scientia Agrícola (Online) instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Scientia Agrícola (Online) |
collection |
Scientia Agrícola (Online) |
repository.name.fl_str_mv |
Scientia Agrícola (Online) - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
scientia@usp.br||alleoni@usp.br |
_version_ |
1748936466025676800 |