Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Scientia Agrícola (Online) |
Texto Completo: | https://www.revistas.usp.br/sa/article/view/183072 |
Resumo: | Leaf hyperspectral reflectance has been used to estimate nutrient concentrations in plants in narrow bands of the electromagnetic spectrum. The aim of this study was to estimate leaf nutrient concentrations using leaf hyperspectral reflectance and verify the variable selection methods using the partial least squares regression (PLSR). Two studies were carried out using stands with Eucalyptus clones. Study I was established in Eucalyptus stands with three clones, classifying leaves into five colour patterns using the Munsell chart for plant tissues. Immediately after leaf collection, leaf reflectance was read and the chemical analysis was performed. Study II was carried out in commercial clonal stands of Eucalyptus performing the same leaf sampling and chemical analysis as used in Study I. All leaf reflectance spectra were smoothed and three more pre-processing procedures were applied. In addition, three methods of PLSR were tested. The first derivative was more accurate for predicting nitrogen (Rcv 2 = 0.95), phosphorous (Rcv 2 = 0.93), and sulphur concentration (Rcv 2 = 0.85). The estimates for concentrations of calcium (Rcv 2 = 0.81), magnesium (Rcv 2 = 0.22), and potassium (Rcv 2 = 0.76) were more accurate using the logarithm transformation. Only the estimates for iron concentrations were performed with higher accuracy (Rcv 2 = 0.35) using the smoothed reflectance. The copper concentrations were more accurate (Rcv 2 = 0.78) using the logarithm transformation. Concentrations of boron (Rcv 2 = 0.68) and manganese (Rcv 2 = 0.79) were more accurate using the first derivative, while zinc (Rcv 2 = 0.31) concentration was most accurate using the second derivative. |
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Scientia Agrícola (Online) |
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Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regressionremote sensingtree monitoringmodellingvariable selectionLeaf hyperspectral reflectance has been used to estimate nutrient concentrations in plants in narrow bands of the electromagnetic spectrum. The aim of this study was to estimate leaf nutrient concentrations using leaf hyperspectral reflectance and verify the variable selection methods using the partial least squares regression (PLSR). Two studies were carried out using stands with Eucalyptus clones. Study I was established in Eucalyptus stands with three clones, classifying leaves into five colour patterns using the Munsell chart for plant tissues. Immediately after leaf collection, leaf reflectance was read and the chemical analysis was performed. Study II was carried out in commercial clonal stands of Eucalyptus performing the same leaf sampling and chemical analysis as used in Study I. All leaf reflectance spectra were smoothed and three more pre-processing procedures were applied. In addition, three methods of PLSR were tested. The first derivative was more accurate for predicting nitrogen (Rcv 2 = 0.95), phosphorous (Rcv 2 = 0.93), and sulphur concentration (Rcv 2 = 0.85). The estimates for concentrations of calcium (Rcv 2 = 0.81), magnesium (Rcv 2 = 0.22), and potassium (Rcv 2 = 0.76) were more accurate using the logarithm transformation. Only the estimates for iron concentrations were performed with higher accuracy (Rcv 2 = 0.35) using the smoothed reflectance. The copper concentrations were more accurate (Rcv 2 = 0.78) using the logarithm transformation. Concentrations of boron (Rcv 2 = 0.68) and manganese (Rcv 2 = 0.79) were more accurate using the first derivative, while zinc (Rcv 2 = 0.31) concentration was most accurate using the second derivative.Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz2020-12-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/sa/article/view/18307210.1590/1678-992X-2018-0409Scientia Agricola; v. 77 n. 6 (2020); e20180409Scientia Agricola; Vol. 77 Núm. 6 (2020); e20180409Scientia Agricola; Vol. 77 No. 6 (2020); e201804091678-992X0103-9016reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USPenghttps://www.revistas.usp.br/sa/article/view/183072/169807Copyright (c) 2020 Scientia Agricolahttp://creativecommons.org/licenses/by-nc/4.0info:eu-repo/semantics/openAccessOliveira, Luiz Felipe Ramalho de Santana, Reynaldo Campos 2021-03-11T17:54:00Zoai:revistas.usp.br:article/183072Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2021-03-11T17:54Scientia Agrícola (Online) - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
title |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
spellingShingle |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression Oliveira, Luiz Felipe Ramalho de remote sensing tree monitoring modelling variable selection |
title_short |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
title_full |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
title_fullStr |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
title_full_unstemmed |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
title_sort |
Estimation of leaf nutrient concentration from hyperspectral reflectance in Eucalyptus using partial least squares regression |
author |
Oliveira, Luiz Felipe Ramalho de |
author_facet |
Oliveira, Luiz Felipe Ramalho de Santana, Reynaldo Campos |
author_role |
author |
author2 |
Santana, Reynaldo Campos |
author2_role |
author |
dc.contributor.author.fl_str_mv |
Oliveira, Luiz Felipe Ramalho de Santana, Reynaldo Campos |
dc.subject.por.fl_str_mv |
remote sensing tree monitoring modelling variable selection |
topic |
remote sensing tree monitoring modelling variable selection |
description |
Leaf hyperspectral reflectance has been used to estimate nutrient concentrations in plants in narrow bands of the electromagnetic spectrum. The aim of this study was to estimate leaf nutrient concentrations using leaf hyperspectral reflectance and verify the variable selection methods using the partial least squares regression (PLSR). Two studies were carried out using stands with Eucalyptus clones. Study I was established in Eucalyptus stands with three clones, classifying leaves into five colour patterns using the Munsell chart for plant tissues. Immediately after leaf collection, leaf reflectance was read and the chemical analysis was performed. Study II was carried out in commercial clonal stands of Eucalyptus performing the same leaf sampling and chemical analysis as used in Study I. All leaf reflectance spectra were smoothed and three more pre-processing procedures were applied. In addition, three methods of PLSR were tested. The first derivative was more accurate for predicting nitrogen (Rcv 2 = 0.95), phosphorous (Rcv 2 = 0.93), and sulphur concentration (Rcv 2 = 0.85). The estimates for concentrations of calcium (Rcv 2 = 0.81), magnesium (Rcv 2 = 0.22), and potassium (Rcv 2 = 0.76) were more accurate using the logarithm transformation. Only the estimates for iron concentrations were performed with higher accuracy (Rcv 2 = 0.35) using the smoothed reflectance. The copper concentrations were more accurate (Rcv 2 = 0.78) using the logarithm transformation. Concentrations of boron (Rcv 2 = 0.68) and manganese (Rcv 2 = 0.79) were more accurate using the first derivative, while zinc (Rcv 2 = 0.31) concentration was most accurate using the second derivative. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-12-09 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://www.revistas.usp.br/sa/article/view/183072 10.1590/1678-992X-2018-0409 |
url |
https://www.revistas.usp.br/sa/article/view/183072 |
identifier_str_mv |
10.1590/1678-992X-2018-0409 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://www.revistas.usp.br/sa/article/view/183072/169807 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2020 Scientia Agricola http://creativecommons.org/licenses/by-nc/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2020 Scientia Agricola http://creativecommons.org/licenses/by-nc/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz |
publisher.none.fl_str_mv |
Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz |
dc.source.none.fl_str_mv |
Scientia Agricola; v. 77 n. 6 (2020); e20180409 Scientia Agricola; Vol. 77 Núm. 6 (2020); e20180409 Scientia Agricola; Vol. 77 No. 6 (2020); e20180409 1678-992X 0103-9016 reponame:Scientia Agrícola (Online) instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Scientia Agrícola (Online) |
collection |
Scientia Agrícola (Online) |
repository.name.fl_str_mv |
Scientia Agrícola (Online) - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
scientia@usp.br||alleoni@usp.br |
_version_ |
1800222794475110400 |