Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content

Detalhes bibliográficos
Autor(a) principal: Torres,Adalgisa Ribeiro
Data de Publicação: 2015
Outros Autores: Grunvald,Anna Karolina, Martins,Talita Busulini, Santos,Maria Aparecida dos, Lemos,Noélle Giacomini, Silva,Luis Antônio Stabile, Hungria,Mariangela
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162015000100047
Resumo: Biological nitrogen fixation (BNF) has global economic and environmental importance, but has often not been considered in soybean [Glycine max (L.) Merrill] breeding programs. Knowing the genetic diversity and structure of a population within a germoplasm represent a key step for breeding programs. This study aimed at determining the structure of the population and diversity of soybean with regard to BNF and protein content in grain. In total, 191 accessions were evaluated, including 171 commercial soybean cultivars, developed and released by public institutions and private companies in Brazil, and 20 ancestral lines. The genotypes were chosen to represent four genetic groups: 128 Brazilian public genotypes, 20 exotic, and 43 genotypes from private companies. Soybeans were genotyped with 22 SSR markers, previously described as associated with BNF and protein content. Genetic diversity was evaluated using the DARwin 5.0 software. Population structure was inferred by principal component analysis and by the STRUCTURE software. The accessions were distributed in two groups: one clustering approximately 50 % of the accessions, from Brazilian public and private companies; the other one clustering 45 % of the accessions, including Brazilian, exotic and private germoplasms. Some accessions (5 %) were not grouped in any cluster. Principal component analysis explained 29 % of the total variance and there was a tendency to cluster the accessions into two groups. Similar results were obtained with the STRUCTURE, clearly showing two subpopulations. There is variability for BNF and protein content amongst both modern germoplasms cultivated in Brazil and ancestral lines. This variability could be better explored in soybean breeding programs to improve these traits.
id USP-18_c5093758d759800b98b925887adc9bd7
oai_identifier_str oai:scielo:S0103-90162015000100047
network_acronym_str USP-18
network_name_str Scientia Agrícola (Online)
repository_id_str
spelling Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein contentBNFBradyrhizobiumGlycine maxSSR markerssymbiosisBiological nitrogen fixation (BNF) has global economic and environmental importance, but has often not been considered in soybean [Glycine max (L.) Merrill] breeding programs. Knowing the genetic diversity and structure of a population within a germoplasm represent a key step for breeding programs. This study aimed at determining the structure of the population and diversity of soybean with regard to BNF and protein content in grain. In total, 191 accessions were evaluated, including 171 commercial soybean cultivars, developed and released by public institutions and private companies in Brazil, and 20 ancestral lines. The genotypes were chosen to represent four genetic groups: 128 Brazilian public genotypes, 20 exotic, and 43 genotypes from private companies. Soybeans were genotyped with 22 SSR markers, previously described as associated with BNF and protein content. Genetic diversity was evaluated using the DARwin 5.0 software. Population structure was inferred by principal component analysis and by the STRUCTURE software. The accessions were distributed in two groups: one clustering approximately 50 % of the accessions, from Brazilian public and private companies; the other one clustering 45 % of the accessions, including Brazilian, exotic and private germoplasms. Some accessions (5 %) were not grouped in any cluster. Principal component analysis explained 29 % of the total variance and there was a tendency to cluster the accessions into two groups. Similar results were obtained with the STRUCTURE, clearly showing two subpopulations. There is variability for BNF and protein content amongst both modern germoplasms cultivated in Brazil and ancestral lines. This variability could be better explored in soybean breeding programs to improve these traits.Escola Superior de Agricultura "Luiz de Queiroz"2015-02-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162015000100047Scientia Agricola v.72 n.1 2015reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/0103-9016-2014-0039info:eu-repo/semantics/openAccessTorres,Adalgisa RibeiroGrunvald,Anna KarolinaMartins,Talita BusuliniSantos,Maria Aparecida dosLemos,Noélle GiacominiSilva,Luis Antônio StabileHungria,Mariangelaeng2015-03-20T00:00:00Zoai:scielo:S0103-90162015000100047Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2015-03-20T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
title Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
spellingShingle Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
Torres,Adalgisa Ribeiro
BNF
Bradyrhizobium
Glycine max
SSR markers
symbiosis
title_short Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
title_full Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
title_fullStr Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
title_full_unstemmed Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
title_sort Genetic structure and diversity of a soybean germplasm considering biological nitrogen fixation and protein content
author Torres,Adalgisa Ribeiro
author_facet Torres,Adalgisa Ribeiro
Grunvald,Anna Karolina
Martins,Talita Busulini
Santos,Maria Aparecida dos
Lemos,Noélle Giacomini
Silva,Luis Antônio Stabile
Hungria,Mariangela
author_role author
author2 Grunvald,Anna Karolina
Martins,Talita Busulini
Santos,Maria Aparecida dos
Lemos,Noélle Giacomini
Silva,Luis Antônio Stabile
Hungria,Mariangela
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Torres,Adalgisa Ribeiro
Grunvald,Anna Karolina
Martins,Talita Busulini
Santos,Maria Aparecida dos
Lemos,Noélle Giacomini
Silva,Luis Antônio Stabile
Hungria,Mariangela
dc.subject.por.fl_str_mv BNF
Bradyrhizobium
Glycine max
SSR markers
symbiosis
topic BNF
Bradyrhizobium
Glycine max
SSR markers
symbiosis
description Biological nitrogen fixation (BNF) has global economic and environmental importance, but has often not been considered in soybean [Glycine max (L.) Merrill] breeding programs. Knowing the genetic diversity and structure of a population within a germoplasm represent a key step for breeding programs. This study aimed at determining the structure of the population and diversity of soybean with regard to BNF and protein content in grain. In total, 191 accessions were evaluated, including 171 commercial soybean cultivars, developed and released by public institutions and private companies in Brazil, and 20 ancestral lines. The genotypes were chosen to represent four genetic groups: 128 Brazilian public genotypes, 20 exotic, and 43 genotypes from private companies. Soybeans were genotyped with 22 SSR markers, previously described as associated with BNF and protein content. Genetic diversity was evaluated using the DARwin 5.0 software. Population structure was inferred by principal component analysis and by the STRUCTURE software. The accessions were distributed in two groups: one clustering approximately 50 % of the accessions, from Brazilian public and private companies; the other one clustering 45 % of the accessions, including Brazilian, exotic and private germoplasms. Some accessions (5 %) were not grouped in any cluster. Principal component analysis explained 29 % of the total variance and there was a tendency to cluster the accessions into two groups. Similar results were obtained with the STRUCTURE, clearly showing two subpopulations. There is variability for BNF and protein content amongst both modern germoplasms cultivated in Brazil and ancestral lines. This variability could be better explored in soybean breeding programs to improve these traits.
publishDate 2015
dc.date.none.fl_str_mv 2015-02-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162015000100047
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162015000100047
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/0103-9016-2014-0039
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
dc.source.none.fl_str_mv Scientia Agricola v.72 n.1 2015
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
_version_ 1748936463714615296