Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images

Detalhes bibliográficos
Autor(a) principal: Zheng, Jinjing
Data de Publicação: 2023
Outros Autores: Dong, Haibo, Li, Ming, Lin, Xueyao, Wang, Chaochao
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Clinics
Texto Completo: https://www.revistas.usp.br/clinics/article/view/214031
Resumo: Objective: To investigate the value of a nomogram based on multiparametric and multiregional MR images to predict Isocitrate Dehydrogenase-1 (IDH1) gene mutations in glioma. Data and methods: The authors performed a retrospective analysis of 110 MR images of surgically confirmed pathological gliomas; 33 patients with IDH1 gene Mutation (IDH1-M) and 77 patients with Wild-type IDH1 (IDH1-W) were divided into training and validation sets in a 7:3 ratio. The clinical features were statistically analyzed using SPSS and R software. Three glioma regions (rCET, rE, rNEC) were outlined using ITK-SNAP software and projected to four conventional sequences (T1, T2, Flair, T1C) for feature extraction using AI-Kit software. The extracted features were screened using R software. A logistic regression model was established, and a nomogram was generated using the selected clinical features. Eight models were developed based on different sequences and ROIs, and Receiver Operating Characteristic (ROC) curves were used to evaluate the predictive efficacy. Decision curve analysis was performed to assess the clinical usefulness. Results: Age was selected with Radscore to construct the nomogram. The Model 1 AUC values based on four sequences and three ROIs were the highest in these models, at 0.93 and 0.89, respectively. Decision curve analysis indicated that the net benefit of model 1 was higher than that of the other models for most Pt-values. Conclusion: A nomogram based on multiparametric and multiregional MR images can predict the mutation status of the IDH1 gene accurately.
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spelling Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR imagesGlioma of the brainMagnetic resonance imagingIsocitrate dehydrogenaseRadiomicsGenotypeObjective: To investigate the value of a nomogram based on multiparametric and multiregional MR images to predict Isocitrate Dehydrogenase-1 (IDH1) gene mutations in glioma. Data and methods: The authors performed a retrospective analysis of 110 MR images of surgically confirmed pathological gliomas; 33 patients with IDH1 gene Mutation (IDH1-M) and 77 patients with Wild-type IDH1 (IDH1-W) were divided into training and validation sets in a 7:3 ratio. The clinical features were statistically analyzed using SPSS and R software. Three glioma regions (rCET, rE, rNEC) were outlined using ITK-SNAP software and projected to four conventional sequences (T1, T2, Flair, T1C) for feature extraction using AI-Kit software. The extracted features were screened using R software. A logistic regression model was established, and a nomogram was generated using the selected clinical features. Eight models were developed based on different sequences and ROIs, and Receiver Operating Characteristic (ROC) curves were used to evaluate the predictive efficacy. Decision curve analysis was performed to assess the clinical usefulness. Results: Age was selected with Radscore to construct the nomogram. The Model 1 AUC values based on four sequences and three ROIs were the highest in these models, at 0.93 and 0.89, respectively. Decision curve analysis indicated that the net benefit of model 1 was higher than that of the other models for most Pt-values. Conclusion: A nomogram based on multiparametric and multiregional MR images can predict the mutation status of the IDH1 gene accurately.Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo2023-06-22info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/clinics/article/view/21403110.1016/j.clinsp.2023.100238Clinics; Vol. 78 (2023); 100238Clinics; v. 78 (2023); 100238Clinics; Vol. 78 (2023); 1002381980-53221807-5932reponame:Clinicsinstname:Universidade de São Paulo (USP)instacron:USPenghttps://www.revistas.usp.br/clinics/article/view/214031/196268Copyright (c) 2023 Clinicsinfo:eu-repo/semantics/openAccessZheng, JinjingDong, HaiboLi, MingLin, XueyaoWang, Chaochao2023-07-06T13:05:40Zoai:revistas.usp.br:article/214031Revistahttps://www.revistas.usp.br/clinicsPUBhttps://www.revistas.usp.br/clinics/oai||clinics@hc.fm.usp.br1980-53221807-5932opendoar:2023-07-06T13:05:40Clinics - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
title Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
spellingShingle Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
Zheng, Jinjing
Glioma of the brain
Magnetic resonance imaging
Isocitrate dehydrogenase
Radiomics
Genotype
title_short Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
title_full Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
title_fullStr Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
title_full_unstemmed Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
title_sort Prediction of IDH1 gene mutation by a nomogram based on multiparametric and multiregional MR images
author Zheng, Jinjing
author_facet Zheng, Jinjing
Dong, Haibo
Li, Ming
Lin, Xueyao
Wang, Chaochao
author_role author
author2 Dong, Haibo
Li, Ming
Lin, Xueyao
Wang, Chaochao
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Zheng, Jinjing
Dong, Haibo
Li, Ming
Lin, Xueyao
Wang, Chaochao
dc.subject.por.fl_str_mv Glioma of the brain
Magnetic resonance imaging
Isocitrate dehydrogenase
Radiomics
Genotype
topic Glioma of the brain
Magnetic resonance imaging
Isocitrate dehydrogenase
Radiomics
Genotype
description Objective: To investigate the value of a nomogram based on multiparametric and multiregional MR images to predict Isocitrate Dehydrogenase-1 (IDH1) gene mutations in glioma. Data and methods: The authors performed a retrospective analysis of 110 MR images of surgically confirmed pathological gliomas; 33 patients with IDH1 gene Mutation (IDH1-M) and 77 patients with Wild-type IDH1 (IDH1-W) were divided into training and validation sets in a 7:3 ratio. The clinical features were statistically analyzed using SPSS and R software. Three glioma regions (rCET, rE, rNEC) were outlined using ITK-SNAP software and projected to four conventional sequences (T1, T2, Flair, T1C) for feature extraction using AI-Kit software. The extracted features were screened using R software. A logistic regression model was established, and a nomogram was generated using the selected clinical features. Eight models were developed based on different sequences and ROIs, and Receiver Operating Characteristic (ROC) curves were used to evaluate the predictive efficacy. Decision curve analysis was performed to assess the clinical usefulness. Results: Age was selected with Radscore to construct the nomogram. The Model 1 AUC values based on four sequences and three ROIs were the highest in these models, at 0.93 and 0.89, respectively. Decision curve analysis indicated that the net benefit of model 1 was higher than that of the other models for most Pt-values. Conclusion: A nomogram based on multiparametric and multiregional MR images can predict the mutation status of the IDH1 gene accurately.
publishDate 2023
dc.date.none.fl_str_mv 2023-06-22
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/clinics/article/view/214031
10.1016/j.clinsp.2023.100238
url https://www.revistas.usp.br/clinics/article/view/214031
identifier_str_mv 10.1016/j.clinsp.2023.100238
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/clinics/article/view/214031/196268
dc.rights.driver.fl_str_mv Copyright (c) 2023 Clinics
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2023 Clinics
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo
publisher.none.fl_str_mv Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo
dc.source.none.fl_str_mv Clinics; Vol. 78 (2023); 100238
Clinics; v. 78 (2023); 100238
Clinics; Vol. 78 (2023); 100238
1980-5322
1807-5932
reponame:Clinics
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Clinics
collection Clinics
repository.name.fl_str_mv Clinics - Universidade de São Paulo (USP)
repository.mail.fl_str_mv ||clinics@hc.fm.usp.br
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