First investigation of genetic control of meiosis in sugarcane

Detalhes bibliográficos
Autor(a) principal: Nina Reis Soares
Data de Publicação: 2023
Tipo de documento: Tese
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: https://doi.org/10.11606/T.11.2023.tde-05012024-155836
Resumo: Sugarcane (Saccharum spp.) has one of the most complex crop genomes. Modern varieties are highly polyploids and aneuploids, resulting from interspecific hybridization between Saccharum officinarum and S. spontaneum. Research on the meiotic control in polyploid species is limited, with the exception of wheat Ph1 locus, carrying the meiotic gene ZIP4 (TaZIP4-B2) that promotes pairing and synapsis between homologues, whilst suppressing CO between homoeologous chromosomes. In sugarcane, despite its interspecific origin, bivalent association is favored, and multivalents, if they occur, are resolved at the end of meiosis I. Our aim here was to investigate the supposedly control of synapsis in sugarcane. We have investigated the ZIP4 gene and performed the immunolocalization of meiotic proteins, namely the synaptonemal complex proteins ZYP1 and ASY1. The sugarcane ZIP4 gene is located on chromosome 3 and it is expressed more abundantly in flowers, showing a similar profile to that of TaZIP4-B2. The expression level of ZIP4 is higher in S. spontaneum, an evolving autopolyploid, and less expressed in S. officinarum, a legitimate octaploid species. The ZIP4 protein contains a TPR domain, essential to its scaffolding function, and the 3D structure prediction is highly similar to that of TaZIP4-B2. The immunolocalization of the ASY1 and ZYP1 proteins revealed that S. officinarum completes synapsis. However, in S. spontaneum and SP80-3280, a modern variety, no nuclei with complete synapsis were observed. Our results will have implications for sugarcane genetic mapping and genomics, whose understanding of inheritance and genome organization remain somewhat obscure.
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spelling info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis First investigation of genetic control of meiosis in sugarcane Primeira investigação do controle genético da meiose em cana-de-açúcar 2023-10-27Maria Lucia Carneiro VieiraMonalisa Sampaio CarneiroVânia Helena TechioNina Reis SoaresUniversidade de São PauloAgronomia (Genética e Melhoramento de Plantas)USPBR Saccharum Saccharum ZIP4 ZIP4 Meiose Meiosis Sinapse Synapsis Sugarcane (Saccharum spp.) has one of the most complex crop genomes. Modern varieties are highly polyploids and aneuploids, resulting from interspecific hybridization between Saccharum officinarum and S. spontaneum. Research on the meiotic control in polyploid species is limited, with the exception of wheat Ph1 locus, carrying the meiotic gene ZIP4 (TaZIP4-B2) that promotes pairing and synapsis between homologues, whilst suppressing CO between homoeologous chromosomes. In sugarcane, despite its interspecific origin, bivalent association is favored, and multivalents, if they occur, are resolved at the end of meiosis I. Our aim here was to investigate the supposedly control of synapsis in sugarcane. We have investigated the ZIP4 gene and performed the immunolocalization of meiotic proteins, namely the synaptonemal complex proteins ZYP1 and ASY1. The sugarcane ZIP4 gene is located on chromosome 3 and it is expressed more abundantly in flowers, showing a similar profile to that of TaZIP4-B2. The expression level of ZIP4 is higher in S. spontaneum, an evolving autopolyploid, and less expressed in S. officinarum, a legitimate octaploid species. The ZIP4 protein contains a TPR domain, essential to its scaffolding function, and the 3D structure prediction is highly similar to that of TaZIP4-B2. The immunolocalization of the ASY1 and ZYP1 proteins revealed that S. officinarum completes synapsis. However, in S. spontaneum and SP80-3280, a modern variety, no nuclei with complete synapsis were observed. Our results will have implications for sugarcane genetic mapping and genomics, whose understanding of inheritance and genome organization remain somewhat obscure. A cana-de-açúcar (Saccharum spp.) é a espécie cultivada com um dos genomas mais complexos. As variedades modernas são altamente poliplóides e aneuploides, resultantes da hibridização interespecífica entre Saccharum officinarum e S. spontaneum. A pesquisa sobre o controle meiótico em espécies poliplóides é limitada, com exceção do locus Ph1 do trigo, que carrega o gene meiótico ZIP4 (TaZIP4-B2) que promove o pareamento e a sinapse entre homólogos, enquanto suprime o CO entre os cromossomos homoeólogos. Na cana-de-açúcar, apesar de sua origem interespecífica, a associação bivalente é favorecida, e os multivalentes, caso ocorram, são resolvidos ao final da meiose I. Nosso objetivo aqui foi investigar o suposto controle da sinapse na cana-de-açúcar. Investigamos o gene ZIP4 e realizamos a imunolocalização de proteínas meióticas, especificamente as proteínas do complexo sinaptonêmico ZYP1 e ASY1. O gene ZIP4 da cana-de-açúcar está localizado no cromossomo 3 e é expresso mais abundantemente nas flores, apresentando perfil semelhante ao do TaZIP4- B2. O nível de expressão de ZIP4 é maior em S. spontaneum, um autopoliplóide em evolução, e menos expresso em S. officinarum, uma espécie octaplóide legítima. A proteína ZIP4 contém um domínio TPR, essencial para a sua função de scaffold, e a predição da estrutura 3D é altamente semelhante à do TaZIP4-B2. A imunolocalização das proteínas ASY1 e ZYP1 revelou que S. officinarum completa a sinapse. Porém, em S. spontaneum e SP80-3280, uma variedade moderna, não foram observados núcleos com sinapse completa. Nossos resultados terão implicações para o mapeamento genético e a genômica da cana-de-açúcar, cuja compreensão da herança e da organização do genoma permanece um tanto obscura. https://doi.org/10.11606/T.11.2023.tde-05012024-155836info:eu-repo/semantics/openAccessengreponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USP2024-03-15T13:20:53Zoai:teses.usp.br:tde-05012024-155836Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212024-01-08T17:50:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.en.fl_str_mv First investigation of genetic control of meiosis in sugarcane
dc.title.alternative.pt.fl_str_mv Primeira investigação do controle genético da meiose em cana-de-açúcar
title First investigation of genetic control of meiosis in sugarcane
spellingShingle First investigation of genetic control of meiosis in sugarcane
Nina Reis Soares
title_short First investigation of genetic control of meiosis in sugarcane
title_full First investigation of genetic control of meiosis in sugarcane
title_fullStr First investigation of genetic control of meiosis in sugarcane
title_full_unstemmed First investigation of genetic control of meiosis in sugarcane
title_sort First investigation of genetic control of meiosis in sugarcane
author Nina Reis Soares
author_facet Nina Reis Soares
author_role author
dc.contributor.advisor1.fl_str_mv Maria Lucia Carneiro Vieira
dc.contributor.referee1.fl_str_mv Monalisa Sampaio Carneiro
dc.contributor.referee2.fl_str_mv Vânia Helena Techio
dc.contributor.author.fl_str_mv Nina Reis Soares
contributor_str_mv Maria Lucia Carneiro Vieira
Monalisa Sampaio Carneiro
Vânia Helena Techio
description Sugarcane (Saccharum spp.) has one of the most complex crop genomes. Modern varieties are highly polyploids and aneuploids, resulting from interspecific hybridization between Saccharum officinarum and S. spontaneum. Research on the meiotic control in polyploid species is limited, with the exception of wheat Ph1 locus, carrying the meiotic gene ZIP4 (TaZIP4-B2) that promotes pairing and synapsis between homologues, whilst suppressing CO between homoeologous chromosomes. In sugarcane, despite its interspecific origin, bivalent association is favored, and multivalents, if they occur, are resolved at the end of meiosis I. Our aim here was to investigate the supposedly control of synapsis in sugarcane. We have investigated the ZIP4 gene and performed the immunolocalization of meiotic proteins, namely the synaptonemal complex proteins ZYP1 and ASY1. The sugarcane ZIP4 gene is located on chromosome 3 and it is expressed more abundantly in flowers, showing a similar profile to that of TaZIP4-B2. The expression level of ZIP4 is higher in S. spontaneum, an evolving autopolyploid, and less expressed in S. officinarum, a legitimate octaploid species. The ZIP4 protein contains a TPR domain, essential to its scaffolding function, and the 3D structure prediction is highly similar to that of TaZIP4-B2. The immunolocalization of the ASY1 and ZYP1 proteins revealed that S. officinarum completes synapsis. However, in S. spontaneum and SP80-3280, a modern variety, no nuclei with complete synapsis were observed. Our results will have implications for sugarcane genetic mapping and genomics, whose understanding of inheritance and genome organization remain somewhat obscure.
publishDate 2023
dc.date.issued.fl_str_mv 2023-10-27
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
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dc.identifier.uri.fl_str_mv https://doi.org/10.11606/T.11.2023.tde-05012024-155836
url https://doi.org/10.11606/T.11.2023.tde-05012024-155836
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade de São Paulo
dc.publisher.program.fl_str_mv Agronomia (Genética e Melhoramento de Plantas)
dc.publisher.initials.fl_str_mv USP
dc.publisher.country.fl_str_mv BR
publisher.none.fl_str_mv Universidade de São Paulo
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da USP
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reponame_str Biblioteca Digital de Teses e Dissertações da USP
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
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