Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme

Detalhes bibliográficos
Autor(a) principal: Cardoso, Iara Aimê
Data de Publicação: 2019
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: http://www.teses.usp.br/teses/disponiveis/60/60136/tde-28032020-215307/
Resumo: Schistomiasis is a neglected tropical disease caused by trematodes worms from the genus Schistosoma. Schistosomiasis is the second most devastating parasitic disease after malaria. The disease has a high economic burden and affects mainly poor population without access to proper sanitation. Praziquantel is the only drug approved for the treatment of schistosomiasis and resistance is already reported. Fumarate hydratases or fumarases are enzymes that catalyze the reversible hydration of fumarate to L-malate. This enzyme participates in DNA repair and important metabolic processes such as the urea and the tricarboxylic acid cycles. Fumarases are divided in two classes, and Schistosoma mansoni possess both, being class I localized in mitochondria, while class II is cytosolic. The fundamental role of fumarases in the metabolism make them potential target for drug design against schistosomiasis. This work describes, for the first time, the cloning, expression and purification protocol for the class II fumarate hydratase from Schistosoma mansoni (SmFHII). In order to estimate the contribution of the reverse reaction, the enzyme was kinetically characterized using both substrates concomitantly. SmFHII was shown to follow a MichaelisMenten mechanism of catalysis with of 19 mM-1s-1 and of 49 mM-1s-1, and of 0.56 mM and of 0.15 mM. Differential scanning fluorimetry (DSF) performed under different chemical environments shows that the highest thermal stability is reached at pH 7.5 and at higher ionic strength. The significant thermoshift observed for SmFHII in presence of well known ligands makes DSF the adequate technique for ligand screening. SmFHII structure in complex with L-malate was determined by single crystal X-ray diffraction, at 1.85 Å resolution. A new construct [SmFHII(Δ263-277)] lacking the additional portion only found in trematode worms was also evaluated by kinetic and DSF experiments. Although not essential for activity, the results suggest that the removal of this region impacts on protein stability and may has influence on L-malate catalysis. The differences between SmFHII and human fumarase are distributed all over the structure, and could be explored to design new selective inhibitors.
id USP_3027da10970647c57f04ef524c91d747
oai_identifier_str oai:teses.usp.br:tde-28032020-215307
network_acronym_str USP
network_name_str Biblioteca Digital de Teses e Dissertações da USP
repository_id_str 2721
spelling Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzymeCaracterização estrutural e bioquímica da enzima fumarato hidratase classe II de Schistosoma mansoniCaracterização cinéticaCristalografia de raios-xFumarate hydrataseFumarato hidrataseKinetic characterizationSchistosoma mansoniSchistosoma mansoniX-ray crystallographySchistomiasis is a neglected tropical disease caused by trematodes worms from the genus Schistosoma. Schistosomiasis is the second most devastating parasitic disease after malaria. The disease has a high economic burden and affects mainly poor population without access to proper sanitation. Praziquantel is the only drug approved for the treatment of schistosomiasis and resistance is already reported. Fumarate hydratases or fumarases are enzymes that catalyze the reversible hydration of fumarate to L-malate. This enzyme participates in DNA repair and important metabolic processes such as the urea and the tricarboxylic acid cycles. Fumarases are divided in two classes, and Schistosoma mansoni possess both, being class I localized in mitochondria, while class II is cytosolic. The fundamental role of fumarases in the metabolism make them potential target for drug design against schistosomiasis. This work describes, for the first time, the cloning, expression and purification protocol for the class II fumarate hydratase from Schistosoma mansoni (SmFHII). In order to estimate the contribution of the reverse reaction, the enzyme was kinetically characterized using both substrates concomitantly. SmFHII was shown to follow a MichaelisMenten mechanism of catalysis with of 19 mM-1s-1 and of 49 mM-1s-1, and of 0.56 mM and of 0.15 mM. Differential scanning fluorimetry (DSF) performed under different chemical environments shows that the highest thermal stability is reached at pH 7.5 and at higher ionic strength. The significant thermoshift observed for SmFHII in presence of well known ligands makes DSF the adequate technique for ligand screening. SmFHII structure in complex with L-malate was determined by single crystal X-ray diffraction, at 1.85 Å resolution. A new construct [SmFHII(Δ263-277)] lacking the additional portion only found in trematode worms was also evaluated by kinetic and DSF experiments. Although not essential for activity, the results suggest that the removal of this region impacts on protein stability and may has influence on L-malate catalysis. The differences between SmFHII and human fumarase are distributed all over the structure, and could be explored to design new selective inhibitors.A esquistossomose é uma doença tropical negligenciada causada por parasitas trematódeos do gênero Schistosoma. A esquistossomose é a segunda doença parasitária mais devastadora do mundo, atrás apenas da malária. A doença tem um alto impacto econômico, afetando principalmente a população pobre sem acesso a saneamento adequado. Praziquantel é o único medicamento aprovado para o tratamento da esquistossomose e já existem relatos de parasitas resistentes a esse fármaco. Fumarato hidratases ou fumarases são enzimas que catalisam a hidratação reversível de fumarato em L-malato. Essa enzima participa do reparo ao dano do DNA e de processos metabólicos importantes, como os ciclos da uréia e do ácido tricarboxílico. As fumarases são divididas em duas classes e o S. mansoni possui ambas, sendo a classe I mitocondrial, enquanto a classe II é citosólica. O papel fundamental da fumarase no metabolismo faz dela um alvo potencial para o planejamento de fármacos contra a esquistossomose. Este trabalho descreve, pela primeira vez, o protocolo de clonagem, expressão e purificação da fumarato hidratase classe II de Schistosoma mansoni (SmFHII). De forma a estimar a contribuição da reação reversa, a enzima foi caracterizada cineticamente utilizando os dois substratos concomitantemente. A SmFHII demonstrou seguir o mecanismo de catálise de Michaelis-Menten, tendo um de 19 mM-1s-1 e de 49 mM-1s-1, e de 0,56 mM e de 0,15 mM. Fluorimetria de varredura diferencial (DSF) realizada em diferentes ambientes químicos demonstrou que a maior estabilidade térmica da proteína é alcançada em pH 7,5 e também com o aumento alta força iônica, além de ser uma técnica útil para a triagem de ligantes. A estrutura da SmFHII foi determinada por difração de raios-X de monocristal, com uma resolução de 1,85 Å. Uma nova construção [SmFHII(Δ263-277)] sem a porção adicional, encontrada apenas em vermes de trematódeos, também foi avaliada por ensaios cinéticos e de DSF. Embora não seja essencial para a atividade enzimática, os resultados sugerem que a remoção dessa região afeta a estabilidade da proteína e pode ter influência na catálise do L-malato. As diferenças entre SmFHII e fumarase humana estão distribuídas por toda a estrutura e podem ser exploradas para delinear novos inibidores seletivos.Biblioteca Digitais de Teses e Dissertações da USPNonato, Maria CristinaCardoso, Iara Aimê2019-11-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://www.teses.usp.br/teses/disponiveis/60/60136/tde-28032020-215307/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2024-10-09T13:16:04Zoai:teses.usp.br:tde-28032020-215307Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212024-10-09T13:16:04Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
Caracterização estrutural e bioquímica da enzima fumarato hidratase classe II de Schistosoma mansoni
title Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
spellingShingle Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
Cardoso, Iara Aimê
Caracterização cinética
Cristalografia de raios-x
Fumarate hydratase
Fumarato hidratase
Kinetic characterization
Schistosoma mansoni
Schistosoma mansoni
X-ray crystallography
title_short Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
title_full Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
title_fullStr Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
title_full_unstemmed Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
title_sort Structural and biochemical characterization of Schistosoma mansoni class II fumarate hydratase enzyme
author Cardoso, Iara Aimê
author_facet Cardoso, Iara Aimê
author_role author
dc.contributor.none.fl_str_mv Nonato, Maria Cristina
dc.contributor.author.fl_str_mv Cardoso, Iara Aimê
dc.subject.por.fl_str_mv Caracterização cinética
Cristalografia de raios-x
Fumarate hydratase
Fumarato hidratase
Kinetic characterization
Schistosoma mansoni
Schistosoma mansoni
X-ray crystallography
topic Caracterização cinética
Cristalografia de raios-x
Fumarate hydratase
Fumarato hidratase
Kinetic characterization
Schistosoma mansoni
Schistosoma mansoni
X-ray crystallography
description Schistomiasis is a neglected tropical disease caused by trematodes worms from the genus Schistosoma. Schistosomiasis is the second most devastating parasitic disease after malaria. The disease has a high economic burden and affects mainly poor population without access to proper sanitation. Praziquantel is the only drug approved for the treatment of schistosomiasis and resistance is already reported. Fumarate hydratases or fumarases are enzymes that catalyze the reversible hydration of fumarate to L-malate. This enzyme participates in DNA repair and important metabolic processes such as the urea and the tricarboxylic acid cycles. Fumarases are divided in two classes, and Schistosoma mansoni possess both, being class I localized in mitochondria, while class II is cytosolic. The fundamental role of fumarases in the metabolism make them potential target for drug design against schistosomiasis. This work describes, for the first time, the cloning, expression and purification protocol for the class II fumarate hydratase from Schistosoma mansoni (SmFHII). In order to estimate the contribution of the reverse reaction, the enzyme was kinetically characterized using both substrates concomitantly. SmFHII was shown to follow a MichaelisMenten mechanism of catalysis with of 19 mM-1s-1 and of 49 mM-1s-1, and of 0.56 mM and of 0.15 mM. Differential scanning fluorimetry (DSF) performed under different chemical environments shows that the highest thermal stability is reached at pH 7.5 and at higher ionic strength. The significant thermoshift observed for SmFHII in presence of well known ligands makes DSF the adequate technique for ligand screening. SmFHII structure in complex with L-malate was determined by single crystal X-ray diffraction, at 1.85 Å resolution. A new construct [SmFHII(Δ263-277)] lacking the additional portion only found in trematode worms was also evaluated by kinetic and DSF experiments. Although not essential for activity, the results suggest that the removal of this region impacts on protein stability and may has influence on L-malate catalysis. The differences between SmFHII and human fumarase are distributed all over the structure, and could be explored to design new selective inhibitors.
publishDate 2019
dc.date.none.fl_str_mv 2019-11-08
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://www.teses.usp.br/teses/disponiveis/60/60136/tde-28032020-215307/
url http://www.teses.usp.br/teses/disponiveis/60/60136/tde-28032020-215307/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv
dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
dc.source.none.fl_str_mv
reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Biblioteca Digital de Teses e Dissertações da USP
collection Biblioteca Digital de Teses e Dissertações da USP
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
_version_ 1815256540425224192