Functional characterization of APC5 in Arabidopsis thaliana

Detalhes bibliográficos
Autor(a) principal: Silva, Luís Felipe Correa da
Data de Publicação: 2023
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: https://www.teses.usp.br/teses/disponiveis/11/11144/tde-12092023-160956/
Resumo: As a multicellular organism, plants have their growth and development directly dependent on the cell division. This process brings together dozens of molecular reactions, which ensures cell proliferation in the most varied plant tissues. The four sequential phases that make up the cell cycle (S, G1, M and G2) have the presence and absence of different molecular components of the cell division program, such as cyclins, CDKs and securins, acting together in order to guarantee the unidirectional progression of the process, in an irreversible way. The ubiquitin-proteasome system (UPS) is a multi-enzymatic cascade that target specific substrates for degradation through 26S proteasome. The Anaphase Promoting Complex/Cyclosome (APC/C) is one of the enzymatic machines responsible for recognizing the substrate to be ubiquitinated by the UPS. In Arabidopsis thaliana, the APC/C has 14 subunits. Several studies have reported that perturbations in the expression levels of some subunits can lead to changes in the plant phenotype, and compromise process such as gametogenesis. The cell division process occurs in synchrony with the other metabolic processes of the cell, as well as of the entire plant. Changes in nutrients or even in intracellular demands can lead to changes in metabolites concentration and their conversion rates, altering the biological processes of the organism. Metabolic changes occur at a rate fast enough to escape transcriptional regulation, forcing the cell to use other ways to regulate its reactions to deal with these changes, such as the action of metabolites as regulators. In this way, this project aims to functionally characterize the APC5 gene from Arabidopsis thaliana, as well as to investigate the changes in the plant metabolism due to alterations in the expression levels of the APC5, possibly correlating the changes with already known process that drive plant growth. The results show that, although metabolic differences could not be detected, overexpression of the APC5 gene was able to change the total area of Arabidopsis rosettes, making them smaller in transgenic strains when compared to wild type. Furthermore, it can be detected that the promoter of the gene is active in the apical merisms of the plant, as well as in the meristem of the lateral roots. Assays with the APC5 protein fused to GFP show that it is located in the nucleus and cytoplasm.
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spelling Functional characterization of APC5 in Arabidopsis thalianaCaracterização funcional do APC5 em Arabidopsis thalianaAPC/CAPC/CAPC5APC5Cell cycleCiclo celularDesenvolvimento e crescimento vegetalPlant growth and developmentAs a multicellular organism, plants have their growth and development directly dependent on the cell division. This process brings together dozens of molecular reactions, which ensures cell proliferation in the most varied plant tissues. The four sequential phases that make up the cell cycle (S, G1, M and G2) have the presence and absence of different molecular components of the cell division program, such as cyclins, CDKs and securins, acting together in order to guarantee the unidirectional progression of the process, in an irreversible way. The ubiquitin-proteasome system (UPS) is a multi-enzymatic cascade that target specific substrates for degradation through 26S proteasome. The Anaphase Promoting Complex/Cyclosome (APC/C) is one of the enzymatic machines responsible for recognizing the substrate to be ubiquitinated by the UPS. In Arabidopsis thaliana, the APC/C has 14 subunits. Several studies have reported that perturbations in the expression levels of some subunits can lead to changes in the plant phenotype, and compromise process such as gametogenesis. The cell division process occurs in synchrony with the other metabolic processes of the cell, as well as of the entire plant. Changes in nutrients or even in intracellular demands can lead to changes in metabolites concentration and their conversion rates, altering the biological processes of the organism. Metabolic changes occur at a rate fast enough to escape transcriptional regulation, forcing the cell to use other ways to regulate its reactions to deal with these changes, such as the action of metabolites as regulators. In this way, this project aims to functionally characterize the APC5 gene from Arabidopsis thaliana, as well as to investigate the changes in the plant metabolism due to alterations in the expression levels of the APC5, possibly correlating the changes with already known process that drive plant growth. The results show that, although metabolic differences could not be detected, overexpression of the APC5 gene was able to change the total area of Arabidopsis rosettes, making them smaller in transgenic strains when compared to wild type. Furthermore, it can be detected that the promoter of the gene is active in the apical merisms of the plant, as well as in the meristem of the lateral roots. Assays with the APC5 protein fused to GFP show that it is located in the nucleus and cytoplasm.Como organismos multicelulares, as plantas têm seu crescimento e desenvolvimento diretamente dependentes da divisão celular. Esse processo reúne dezenas de reações moleculares que garantem a proliferação celular nos mais variados tecidos vegetais. Nas quatro fases sequenciais que compõem o ciclo celular (S, G1, M e G2), a presença e/ou ausência de diferentes componentes moleculares do programa de divisão celular, como ciclinas, CDKs e securinas, garantem a progressão unidirecional do processo, de forma irreversível. O sistema ubiquitina-proteassoma (UPS) é uma cascata multi-enzimática que direciona substratos específicos para degradação por meio do proteassoma 26S. O Complexo Promotor da Anáfase/Ciclossomo (APC/C) é uma das enzimas responsáveis pelo reconhecimento do substrato a ser ubiquitinado pelo UPS. Em Arabidopsis thaliana, o APC/C possui 14 subunidades. Vários estudos relataram que perturbações nos níveis de expressão de algumas subunidades podem levar a alterações no fenótipo da planta, e comprometer processos como a gametogênese. O processo de divisão celular ocorre em sincronia com os outros processos metabólicos da célula, bem como de toda a planta. Alterações nos nutrientes ou mesmo nas demandas intracelulares podem levar a mudanças na concentração de metabólitos e em suas taxas de conversão, alterando os processos biológicos do organismo. Mudanças metabólicas ocorrem em uma taxa suficientemente rápida para escapar da regulação transcricional, obrigando a célula a usar outras maneiras de regular suas reações para lidar com essas mudanças, como a ação de metabólitos como reguladores. Dessa forma, este projeto tem como objetivo caracterizar funcionalmente o gene APC5 de A. thaliana, bem como investigar as alterações no metabolismo da planta devido a alterações nos níveis de expressão do APC5, possivelmente correlacionando as mudanças com processos já conhecidos que impulsionam o crescimento das plantas. Os resultados mostram que, embora diferenças metabólicas não tenham sido detectadas, a superexpressão do gene APC5 foi capaz de alterar a área total das rosetas de Arabidopsis, tornando-as menores em linhagens transgênicas quando comparadas ao tipo selvagem. Além disso, pode-se detectar que o promotor do gene está ativo nos meristemas apicais da planta, assim como no meristema das raízes laterais. Ensaios com a proteína APC5 fundida ao GFP mostram que ela está localizada no núcleo e no citoplasma.Biblioteca Digitais de Teses e Dissertações da USPEloy, Nubia BarbosaSilva, Luís Felipe Correa da2023-07-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/11/11144/tde-12092023-160956/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPReter o conteúdo por motivos de patente, publicação e/ou direitos autoriais.info:eu-repo/semantics/openAccesseng2023-09-13T19:57:02Zoai:teses.usp.br:tde-12092023-160956Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212023-09-13T19:57:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Functional characterization of APC5 in Arabidopsis thaliana
Caracterização funcional do APC5 em Arabidopsis thaliana
title Functional characterization of APC5 in Arabidopsis thaliana
spellingShingle Functional characterization of APC5 in Arabidopsis thaliana
Silva, Luís Felipe Correa da
APC/C
APC/C
APC5
APC5
Cell cycle
Ciclo celular
Desenvolvimento e crescimento vegetal
Plant growth and development
title_short Functional characterization of APC5 in Arabidopsis thaliana
title_full Functional characterization of APC5 in Arabidopsis thaliana
title_fullStr Functional characterization of APC5 in Arabidopsis thaliana
title_full_unstemmed Functional characterization of APC5 in Arabidopsis thaliana
title_sort Functional characterization of APC5 in Arabidopsis thaliana
author Silva, Luís Felipe Correa da
author_facet Silva, Luís Felipe Correa da
author_role author
dc.contributor.none.fl_str_mv Eloy, Nubia Barbosa
dc.contributor.author.fl_str_mv Silva, Luís Felipe Correa da
dc.subject.por.fl_str_mv APC/C
APC/C
APC5
APC5
Cell cycle
Ciclo celular
Desenvolvimento e crescimento vegetal
Plant growth and development
topic APC/C
APC/C
APC5
APC5
Cell cycle
Ciclo celular
Desenvolvimento e crescimento vegetal
Plant growth and development
description As a multicellular organism, plants have their growth and development directly dependent on the cell division. This process brings together dozens of molecular reactions, which ensures cell proliferation in the most varied plant tissues. The four sequential phases that make up the cell cycle (S, G1, M and G2) have the presence and absence of different molecular components of the cell division program, such as cyclins, CDKs and securins, acting together in order to guarantee the unidirectional progression of the process, in an irreversible way. The ubiquitin-proteasome system (UPS) is a multi-enzymatic cascade that target specific substrates for degradation through 26S proteasome. The Anaphase Promoting Complex/Cyclosome (APC/C) is one of the enzymatic machines responsible for recognizing the substrate to be ubiquitinated by the UPS. In Arabidopsis thaliana, the APC/C has 14 subunits. Several studies have reported that perturbations in the expression levels of some subunits can lead to changes in the plant phenotype, and compromise process such as gametogenesis. The cell division process occurs in synchrony with the other metabolic processes of the cell, as well as of the entire plant. Changes in nutrients or even in intracellular demands can lead to changes in metabolites concentration and their conversion rates, altering the biological processes of the organism. Metabolic changes occur at a rate fast enough to escape transcriptional regulation, forcing the cell to use other ways to regulate its reactions to deal with these changes, such as the action of metabolites as regulators. In this way, this project aims to functionally characterize the APC5 gene from Arabidopsis thaliana, as well as to investigate the changes in the plant metabolism due to alterations in the expression levels of the APC5, possibly correlating the changes with already known process that drive plant growth. The results show that, although metabolic differences could not be detected, overexpression of the APC5 gene was able to change the total area of Arabidopsis rosettes, making them smaller in transgenic strains when compared to wild type. Furthermore, it can be detected that the promoter of the gene is active in the apical merisms of the plant, as well as in the meristem of the lateral roots. Assays with the APC5 protein fused to GFP show that it is located in the nucleus and cytoplasm.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-06
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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format masterThesis
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dc.language.iso.fl_str_mv eng
language eng
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dc.rights.driver.fl_str_mv Reter o conteúdo por motivos de patente, publicação e/ou direitos autoriais.
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publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
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reponame_str Biblioteca Digital de Teses e Dissertações da USP
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