MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Brazilian Journal of Chemical Engineering |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322018000300869 |
Resumo: | Abstract Genome-scale metabolic models based on a combination of genome sequence and biochemical information have strongly influenced the field of systems biology. However, basic principles of the operation of metabolic networks, in particular the central metabolism can be easily studied in smaller metabolic (core) models. Komagataeibacter hansenii ATCC 23769 has been used for bacterial nanocellulose (BNC) biosynthesis, and the recent availability of its genome sequence allowed the development of a metabolic model. The core metabolic model was constructed from an initial draft metabolic reconstruction including 74 reactions and 68 metabolites that provides insights for a better understanding of K. hansenii metabolic pathways. The applicability of the model is finally demonstrated by applying the FBA approach, and the in silico simulation successfully predicted the minimal medium and the growing abilities on different substrates. This core model can facilitate system-level metabolic analysis as well as developments for improving BNC production. |
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Brazilian Journal of Chemical Engineering |
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MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESISKomagataeibacter hanseniiBacterial nanocelluloseCore metabolic modelFlux balance analysisAbstract Genome-scale metabolic models based on a combination of genome sequence and biochemical information have strongly influenced the field of systems biology. However, basic principles of the operation of metabolic networks, in particular the central metabolism can be easily studied in smaller metabolic (core) models. Komagataeibacter hansenii ATCC 23769 has been used for bacterial nanocellulose (BNC) biosynthesis, and the recent availability of its genome sequence allowed the development of a metabolic model. The core metabolic model was constructed from an initial draft metabolic reconstruction including 74 reactions and 68 metabolites that provides insights for a better understanding of K. hansenii metabolic pathways. The applicability of the model is finally demonstrated by applying the FBA approach, and the in silico simulation successfully predicted the minimal medium and the growing abilities on different substrates. This core model can facilitate system-level metabolic analysis as well as developments for improving BNC production.Brazilian Society of Chemical Engineering2018-09-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322018000300869Brazilian Journal of Chemical Engineering v.35 n.3 2018reponame:Brazilian Journal of Chemical Engineeringinstname:Associação Brasileira de Engenharia Química (ABEQ)instacron:ABEQ10.1590/0104-6632.20180353s20170327info:eu-repo/semantics/openAccessSouza,Samara Silva deCastro,Julia de VasconcellosPorto,Luismar Marqueseng2019-01-15T00:00:00Zoai:scielo:S0104-66322018000300869Revistahttps://www.scielo.br/j/bjce/https://old.scielo.br/oai/scielo-oai.phprgiudici@usp.br||rgiudici@usp.br1678-43830104-6632opendoar:2019-01-15T00:00Brazilian Journal of Chemical Engineering - Associação Brasileira de Engenharia Química (ABEQ)false |
dc.title.none.fl_str_mv |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
title |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
spellingShingle |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS Souza,Samara Silva de Komagataeibacter hansenii Bacterial nanocellulose Core metabolic model Flux balance analysis |
title_short |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
title_full |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
title_fullStr |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
title_full_unstemmed |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
title_sort |
MODELING THE CORE METABOLISM OF Komagataeibacter hansenii ATCC 23769 TO EVALUATE NANOCELLULOSE BIOSYNTHESIS |
author |
Souza,Samara Silva de |
author_facet |
Souza,Samara Silva de Castro,Julia de Vasconcellos Porto,Luismar Marques |
author_role |
author |
author2 |
Castro,Julia de Vasconcellos Porto,Luismar Marques |
author2_role |
author author |
dc.contributor.author.fl_str_mv |
Souza,Samara Silva de Castro,Julia de Vasconcellos Porto,Luismar Marques |
dc.subject.por.fl_str_mv |
Komagataeibacter hansenii Bacterial nanocellulose Core metabolic model Flux balance analysis |
topic |
Komagataeibacter hansenii Bacterial nanocellulose Core metabolic model Flux balance analysis |
description |
Abstract Genome-scale metabolic models based on a combination of genome sequence and biochemical information have strongly influenced the field of systems biology. However, basic principles of the operation of metabolic networks, in particular the central metabolism can be easily studied in smaller metabolic (core) models. Komagataeibacter hansenii ATCC 23769 has been used for bacterial nanocellulose (BNC) biosynthesis, and the recent availability of its genome sequence allowed the development of a metabolic model. The core metabolic model was constructed from an initial draft metabolic reconstruction including 74 reactions and 68 metabolites that provides insights for a better understanding of K. hansenii metabolic pathways. The applicability of the model is finally demonstrated by applying the FBA approach, and the in silico simulation successfully predicted the minimal medium and the growing abilities on different substrates. This core model can facilitate system-level metabolic analysis as well as developments for improving BNC production. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-09-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322018000300869 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322018000300869 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/0104-6632.20180353s20170327 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Brazilian Society of Chemical Engineering |
publisher.none.fl_str_mv |
Brazilian Society of Chemical Engineering |
dc.source.none.fl_str_mv |
Brazilian Journal of Chemical Engineering v.35 n.3 2018 reponame:Brazilian Journal of Chemical Engineering instname:Associação Brasileira de Engenharia Química (ABEQ) instacron:ABEQ |
instname_str |
Associação Brasileira de Engenharia Química (ABEQ) |
instacron_str |
ABEQ |
institution |
ABEQ |
reponame_str |
Brazilian Journal of Chemical Engineering |
collection |
Brazilian Journal of Chemical Engineering |
repository.name.fl_str_mv |
Brazilian Journal of Chemical Engineering - Associação Brasileira de Engenharia Química (ABEQ) |
repository.mail.fl_str_mv |
rgiudici@usp.br||rgiudici@usp.br |
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1754213175964729344 |