Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2015 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
| Texto Completo: | https://www.arca.fiocruz.br/handle/icict/12133 |
Resumo: | Universidade Federal da Bahia. Instituto de Ciências da Saúde. Salvador, BA, Brasil. |
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Pacheco, Luis Gustavo CarvalhoGuaraldi, Ana Luíza MattosSantos, Carolina S.Veras, Adonney A. O.Guimarães, Luis, C.Abreu, Vinicius Augusto Carvalho dePereira, Felipe L.Soares, Simoar de CarvalhoDorella, Fernanda AlvesCarvalho, Alex F.Leal, Carlos G.Figueiredo, Henrique C.Ramos, Juliana NunesVieira, Verônica VianaFarfour, EricGuiso, NicoleHirata Junior, RaphaelAzevedo, Vasco Ariston de CarvalhoSilva, ArturRamos, Rommel Thiago Juca2015-11-06T23:27:25Z2015PACHECO, L. G. et al. Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests. J. Genomics, v. 3, p. 82-84, 2015.1839-9940https://www.arca.fiocruz.br/handle/icict/1213310.7150/jgen.12886engIvyspring International PublisherCorynebacterium sppPatógenos EmergentesTestes BioquímicosIdentificação MolecularCorynebacterium sppEmerging pathogensBiochemical TestsMolecular IdentificationCorynebacteriumNoxasBiologia MolecularDraft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification testsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleUniversidade Federal da Bahia. Instituto de Ciências da Saúde. Salvador, BA, Brasil.Universidade do Estado do Rio de Janeiro. Faculdade de Ciências Médicas. Rio de Janeiro, RJ, Brasil.Universidade Federal da Bahia. Instituto de Ciências da Saúde. Salvador, BA, Brasil.Universidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, Brasil.Universidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, Brasil / Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Laboratório de Referência Nacional para Doenças dos Animais Aquáticos. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Laboratório de Referência Nacional para Doenças dos Animais Aquáticos. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Laboratório de Referência Nacional para Doenças dos Animais Aquáticos. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Laboratório de Referência Nacional para Doenças dos Animais Aquáticos. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Laboratório de Referência Nacional para Doenças dos Animais Aquáticos. Belo Horizonte, MG, Brasil.Universidade Federal de Minas Gerais. Laboratório de Referência Nacional para Doenças dos Animais Aquáticos. Belo Horizonte, MG, Brasil.Universidade do Estado do Rio de Janeiro. Faculdade de Ciências Médicas. Rio de Janeiro, RJ, Brasil / Fundação Oswaldo Cruz. Instituto Nacional de Controle de Qualidade em Saúde. Departamento de Microbiologia. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Nacional de Controle de Qualidade em Saúde. Departamento de Microbiologia. Rio de Janeiro, RJ, Brasil.Institut Pasteur. Unité de Prévention et Thérapie Moléculaires des Maladies Humaines. Paris, France.Institut Pasteur. Unité de Prévention et Thérapie Moléculaires des Maladies Humaines. Paris, France.Universidade do Estado do Rio de Janeiro. Faculdade de Ciências Médicas. Rio de Janeiro, RJ, Brasil.Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Belo Horizonte, MG, Brasil.Universidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, Brasil.Universidade Federal do Pará. Instituto de Ciências Biológicas. Belém, PA, Brasil.Non-diphtheriae Corynebacterium species have been increasingly recognized as the causative agents of infections in humans. Differential identification of these bacteria in the clinical microbiology laboratory by the most commonly used biochemical tests is challenging, and normally requires additional molecular methods. Herein, we present the annotated draft genome sequences of two isolates of “difficult-to-identify” human-pathogenic corynebacterial species: C. xerosis and C. minutissimum. The genome sequences of ca. 2.7 Mbp, with a mean number of 2,580 protein encoding genes, were also compared with the publicly available genome sequences of strains of C. amycolatum and C. striatum. These results will aid the exploration of novel biochemical reactions to improve existing identification tests as well as the development of more accurate molecular identification methods through detection of species-specific target genes for isolate's identification or drug susceptibility profiling.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82354https://www.arca.fiocruz.br/bitstream/icict/12133/1/license.txt8b4c200b4e10021c5683c6ccaba07169MD51TEXTv03p0082.pdf.txtv03p0082.pdf.txtExtracted texttext/plain11666https://www.arca.fiocruz.br/bitstream/icict/12133/5/v03p0082.pdf.txte560724a579fd7bf4ebcf53cdf619f4eMD55ORIGINALv03p0082.pdfv03p0082.pdfapplication/pdf276850https://www.arca.fiocruz.br/bitstream/icict/12133/4/v03p0082.pdfaf34e737e8172c99d64f6cbef0051b18MD54icict/121332018-06-27 08:54:50.119oai:www.arca.fiocruz.br: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Repositório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352018-06-27T11:54:50Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)false |
| dc.title.en.fl_str_mv |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| title |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| spellingShingle |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests Pacheco, Luis Gustavo Carvalho Corynebacterium spp Patógenos Emergentes Testes Bioquímicos Identificação Molecular Corynebacterium spp Emerging pathogens Biochemical Tests Molecular Identification Corynebacterium Noxas Biologia Molecular |
| title_short |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| title_full |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| title_fullStr |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| title_full_unstemmed |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| title_sort |
Draft genome sequences of two species of "difficult-to-Identify" human-pathogenic Corynebacteria: implications for better identification tests |
| author |
Pacheco, Luis Gustavo Carvalho |
| author_facet |
Pacheco, Luis Gustavo Carvalho Guaraldi, Ana Luíza Mattos Santos, Carolina S. Veras, Adonney A. O. Guimarães, Luis, C. Abreu, Vinicius Augusto Carvalho de Pereira, Felipe L. Soares, Simoar de Carvalho Dorella, Fernanda Alves Carvalho, Alex F. Leal, Carlos G. Figueiredo, Henrique C. Ramos, Juliana Nunes Vieira, Verônica Viana Farfour, Eric Guiso, Nicole Hirata Junior, Raphael Azevedo, Vasco Ariston de Carvalho Silva, Artur Ramos, Rommel Thiago Juca |
| author_role |
author |
| author2 |
Guaraldi, Ana Luíza Mattos Santos, Carolina S. Veras, Adonney A. O. Guimarães, Luis, C. Abreu, Vinicius Augusto Carvalho de Pereira, Felipe L. Soares, Simoar de Carvalho Dorella, Fernanda Alves Carvalho, Alex F. Leal, Carlos G. Figueiredo, Henrique C. Ramos, Juliana Nunes Vieira, Verônica Viana Farfour, Eric Guiso, Nicole Hirata Junior, Raphael Azevedo, Vasco Ariston de Carvalho Silva, Artur Ramos, Rommel Thiago Juca |
| author2_role |
author author author author author author author author author author author author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Pacheco, Luis Gustavo Carvalho Guaraldi, Ana Luíza Mattos Santos, Carolina S. Veras, Adonney A. O. Guimarães, Luis, C. Abreu, Vinicius Augusto Carvalho de Pereira, Felipe L. Soares, Simoar de Carvalho Dorella, Fernanda Alves Carvalho, Alex F. Leal, Carlos G. Figueiredo, Henrique C. Ramos, Juliana Nunes Vieira, Verônica Viana Farfour, Eric Guiso, Nicole Hirata Junior, Raphael Azevedo, Vasco Ariston de Carvalho Silva, Artur Ramos, Rommel Thiago Juca |
| dc.subject.other.pt_BR.fl_str_mv |
Corynebacterium spp Patógenos Emergentes Testes Bioquímicos Identificação Molecular |
| topic |
Corynebacterium spp Patógenos Emergentes Testes Bioquímicos Identificação Molecular Corynebacterium spp Emerging pathogens Biochemical Tests Molecular Identification Corynebacterium Noxas Biologia Molecular |
| dc.subject.en.en.fl_str_mv |
Corynebacterium spp Emerging pathogens Biochemical Tests Molecular Identification |
| dc.subject.decs.pt_BR.fl_str_mv |
Corynebacterium Noxas Biologia Molecular |
| description |
Universidade Federal da Bahia. Instituto de Ciências da Saúde. Salvador, BA, Brasil. |
| publishDate |
2015 |
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2015-11-06T23:27:25Z |
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2015 |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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publishedVersion |
| dc.identifier.citation.fl_str_mv |
PACHECO, L. G. et al. Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests. J. Genomics, v. 3, p. 82-84, 2015. |
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1839-9940 |
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10.7150/jgen.12886 |
| identifier_str_mv |
PACHECO, L. G. et al. Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests. J. Genomics, v. 3, p. 82-84, 2015. 1839-9940 10.7150/jgen.12886 |
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