Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil

Detalhes bibliográficos
Autor(a) principal: Marques, Bianca Cristina Leires
Data de Publicação: 2018
Outros Autores: Morgado, Mariza Gonçalves, Guimarães, Monick Lindenmeyer
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/27401
Resumo: Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de AIDS e Imunologia Molecular. Rio de Janeiro, RJ. Brasil.
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spelling Marques, Bianca Cristina LeiresMorgado, Mariza GonçalvesGuimarães, Monick Lindenmeyer2018-07-10T15:13:11Z2018-07-10T15:13:11Z2018MARQUES, Bianca Cristina Leires; MORGADO, Mariza Gonçalves; GUIMARÂES, Monick Lindenmeyer. Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz, v.113, n.8, e170483, 6p, 2018.0074-0276https://www.arca.fiocruz.br/handle/icict/2740110.1590/0074-027601704831678-8060engFundação Oswaldo Cruz. Instituto Oswaldo CruzHIV-1Epidemiologia MolecularTécnicas de Genotipagemsub-subtipo F1genoma completoRio de JaneiroHIV-1sub-subtype F1full-length genomemolecular epidemiologygenotypingBrazilPotential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazilinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de AIDS e Imunologia Molecular. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de AIDS e Imunologia Molecular. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de AIDS e Imunologia Molecular. Rio de Janeiro, RJ. Brasil.In Brazil, detection of the HIV-1 sub-subtype F1 has decreased with a simultaneous increase in detection of the recombinant FB and FC forms. In previous HIV-1 env molecular epidemiology studies in Rio de Janeiro, 11.4% of the detected sequences were of the F1 sub-subtype. With the goal of re-estimating the prevalence of the HIV-1 F1 sub-subtype, we performed extended analyses of these samples by examining five genomic regions, resulting in 3.3% being confirmed as F1. Moreover, genomic analysis of 11 of the 21 samples identified as F1 confirmed that nine were F1 and two were BF1. Considering the number of samples assayed, the prevalence of F1 was quite low, which supports the use of different genomic regions for the assessment of HIV-1 classification in countries where several subtypes and recombinant forms co-circulate.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/27401/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALbianca_marques_etal_IOC_2018.pdfbianca_marques_etal_IOC_2018.pdfapplication/pdf6274221https://www.arca.fiocruz.br/bitstream/icict/27401/2/bianca_marques_etal_IOC_2018.pdf58768977441c6bafbeab4e8aee7261d0MD52TEXTbianca_marques_etal_IOC_2018.pdf.txtbianca_marques_etal_IOC_2018.pdf.txtExtracted 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dc.title.pt_BR.fl_str_mv Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
title Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
spellingShingle Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
Marques, Bianca Cristina Leires
HIV-1
Epidemiologia Molecular
Técnicas de Genotipagem
sub-subtipo F1
genoma completo
Rio de Janeiro
HIV-1
sub-subtype F1
full-length genome
molecular epidemiology
genotyping
Brazil
title_short Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
title_full Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
title_fullStr Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
title_full_unstemmed Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
title_sort Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil
author Marques, Bianca Cristina Leires
author_facet Marques, Bianca Cristina Leires
Morgado, Mariza Gonçalves
Guimarães, Monick Lindenmeyer
author_role author
author2 Morgado, Mariza Gonçalves
Guimarães, Monick Lindenmeyer
author2_role author
author
dc.contributor.author.fl_str_mv Marques, Bianca Cristina Leires
Morgado, Mariza Gonçalves
Guimarães, Monick Lindenmeyer
dc.subject.other.pt_BR.fl_str_mv HIV-1
Epidemiologia Molecular
Técnicas de Genotipagem
sub-subtipo F1
genoma completo
Rio de Janeiro
topic HIV-1
Epidemiologia Molecular
Técnicas de Genotipagem
sub-subtipo F1
genoma completo
Rio de Janeiro
HIV-1
sub-subtype F1
full-length genome
molecular epidemiology
genotyping
Brazil
dc.subject.en.pt_BR.fl_str_mv HIV-1
sub-subtype F1
full-length genome
molecular epidemiology
genotyping
Brazil
description Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de AIDS e Imunologia Molecular. Rio de Janeiro, RJ. Brasil.
publishDate 2018
dc.date.accessioned.fl_str_mv 2018-07-10T15:13:11Z
dc.date.available.fl_str_mv 2018-07-10T15:13:11Z
dc.date.issued.fl_str_mv 2018
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv MARQUES, Bianca Cristina Leires; MORGADO, Mariza Gonçalves; GUIMARÂES, Monick Lindenmeyer. Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz, v.113, n.8, e170483, 6p, 2018.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/27401
dc.identifier.issn.pt_BR.fl_str_mv 0074-0276
dc.identifier.doi.none.fl_str_mv 10.1590/0074-02760170483
dc.identifier.eissn.none.fl_str_mv 1678-8060
identifier_str_mv MARQUES, Bianca Cristina Leires; MORGADO, Mariza Gonçalves; GUIMARÂES, Monick Lindenmeyer. Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz, v.113, n.8, e170483, 6p, 2018.
0074-0276
10.1590/0074-02760170483
1678-8060
url https://www.arca.fiocruz.br/handle/icict/27401
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Fundação Oswaldo Cruz. Instituto Oswaldo Cruz
publisher.none.fl_str_mv Fundação Oswaldo Cruz. Instituto Oswaldo Cruz
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
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