Detection of three Allexivirus species infecting garlic in Brazil
Autor(a) principal: | |
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Data de Publicação: | 2004 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Pesquisa Agropecuária Brasileira (Online) |
Texto Completo: | https://seer.sct.embrapa.br/index.php/pab/article/view/6832 |
Resumo: | Garlic viruses often occur in mixed infections under field conditions. In this study, garlic samples collected in three geographical areas of Brazil were tested by Dot-ELISA for the detection of allexiviruses using monoclonal specific antibodies to detect Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C) and a polyclonal antiserum able to detect the three virus species mentioned plus Garlic virus D (GarV-D). The detected viruses were biologically isolated by successive passages through Chenopodium quinoa. Reverse Transcriptase Polimerase Chain Reaction (RT-PCR) was performed using primers designed from specific regions of the coat protein genes of Japanese allexiviruses available in the Genetic Bank of National Center of Biotechnology Information (NCBI). By these procedures, individual garlic virus genomes were isolated and sequenced. The nucleotide and amino acid sequence analysis and the one with serological data revealed the presence of three distinct allexiviruses GarV-C, GarV-D and a recently described allexivirus, named Garlic mite-borne filamentous virus (GarMbFV), in Brazil. |
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Detection of three Allexivirus species infecting garlic in BrazilDetecção de três espécies de Allexivirus que infectam o alho no BrasilAllium sativum; virus detection; coat protein; Dot-ELISA; RT-PCRAllium sativum; detecção de vírus; proteínas capsidiais; Dot-ELISA; RT-PCRGarlic viruses often occur in mixed infections under field conditions. In this study, garlic samples collected in three geographical areas of Brazil were tested by Dot-ELISA for the detection of allexiviruses using monoclonal specific antibodies to detect Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C) and a polyclonal antiserum able to detect the three virus species mentioned plus Garlic virus D (GarV-D). The detected viruses were biologically isolated by successive passages through Chenopodium quinoa. Reverse Transcriptase Polimerase Chain Reaction (RT-PCR) was performed using primers designed from specific regions of the coat protein genes of Japanese allexiviruses available in the Genetic Bank of National Center of Biotechnology Information (NCBI). By these procedures, individual garlic virus genomes were isolated and sequenced. The nucleotide and amino acid sequence analysis and the one with serological data revealed the presence of three distinct allexiviruses GarV-C, GarV-D and a recently described allexivirus, named Garlic mite-borne filamentous virus (GarMbFV), in Brazil.Infecções virais em alho são normalmente causadas por um complexo viral. Neste estudo, um complexo viral de alho, coletado em campo, em três regiões geográficas, foi testado com anti-soros monoclonais específicos para Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C) e um anti-soro policlonal capaz de detectar os três vírus mencionados e Garlic virus D (GarV-D). Procedeu-se à amplificação por transcriptase reversa-reação em cadeia da polimerase (RT-PCR) usando oligonucleotídeos sintetizados a partir de regiões específicas de genes de proteínas capsidiais de allexivirus japoneses e disponíveis no GeneBank (National Center of Biotechnology Information - NCBI). Por esse procedimento, vírus individuais foram isolados e seqüenciados. Os vírus detectados foram biologicamente isolados por meio de sucessivas inoculações em Chenopodium quinoa. A análise das seqüências de nucleotídeos, de aminoácidos e os resultados sorológicos revelaram a presença de três espécies distintas de allexivirus GarV-C, GarV-D e Garlic mite-borne filamentous virus (GarMbFV) no Brasil.Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraMelo Filho, Péricles de AlbuquerqueNagata, TatsuyaDusi, André NepomucenoBuso, José AmauriTorres, Antonio CarlosEiras, MarceloResende, Renato de Oliveira2004-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/6832Pesquisa Agropecuaria Brasileira; v.39, n.8, ago. 2004; 735-740Pesquisa Agropecuária Brasileira; v.39, n.8, ago. 2004; 735-7401678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAenghttps://seer.sct.embrapa.br/index.php/pab/article/view/6832/3888info:eu-repo/semantics/openAccess2014-08-21T17:45:38Zoai:ojs.seer.sct.embrapa.br:article/6832Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2014-08-21T17:45:38Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Detection of three Allexivirus species infecting garlic in Brazil Detecção de três espécies de Allexivirus que infectam o alho no Brasil |
title |
Detection of three Allexivirus species infecting garlic in Brazil |
spellingShingle |
Detection of three Allexivirus species infecting garlic in Brazil Melo Filho, Péricles de Albuquerque Allium sativum; virus detection; coat protein; Dot-ELISA; RT-PCR Allium sativum; detecção de vírus; proteínas capsidiais; Dot-ELISA; RT-PCR |
title_short |
Detection of three Allexivirus species infecting garlic in Brazil |
title_full |
Detection of three Allexivirus species infecting garlic in Brazil |
title_fullStr |
Detection of three Allexivirus species infecting garlic in Brazil |
title_full_unstemmed |
Detection of three Allexivirus species infecting garlic in Brazil |
title_sort |
Detection of three Allexivirus species infecting garlic in Brazil |
author |
Melo Filho, Péricles de Albuquerque |
author_facet |
Melo Filho, Péricles de Albuquerque Nagata, Tatsuya Dusi, André Nepomuceno Buso, José Amauri Torres, Antonio Carlos Eiras, Marcelo Resende, Renato de Oliveira |
author_role |
author |
author2 |
Nagata, Tatsuya Dusi, André Nepomuceno Buso, José Amauri Torres, Antonio Carlos Eiras, Marcelo Resende, Renato de Oliveira |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
|
dc.contributor.author.fl_str_mv |
Melo Filho, Péricles de Albuquerque Nagata, Tatsuya Dusi, André Nepomuceno Buso, José Amauri Torres, Antonio Carlos Eiras, Marcelo Resende, Renato de Oliveira |
dc.subject.por.fl_str_mv |
Allium sativum; virus detection; coat protein; Dot-ELISA; RT-PCR Allium sativum; detecção de vírus; proteínas capsidiais; Dot-ELISA; RT-PCR |
topic |
Allium sativum; virus detection; coat protein; Dot-ELISA; RT-PCR Allium sativum; detecção de vírus; proteínas capsidiais; Dot-ELISA; RT-PCR |
description |
Garlic viruses often occur in mixed infections under field conditions. In this study, garlic samples collected in three geographical areas of Brazil were tested by Dot-ELISA for the detection of allexiviruses using monoclonal specific antibodies to detect Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C) and a polyclonal antiserum able to detect the three virus species mentioned plus Garlic virus D (GarV-D). The detected viruses were biologically isolated by successive passages through Chenopodium quinoa. Reverse Transcriptase Polimerase Chain Reaction (RT-PCR) was performed using primers designed from specific regions of the coat protein genes of Japanese allexiviruses available in the Genetic Bank of National Center of Biotechnology Information (NCBI). By these procedures, individual garlic virus genomes were isolated and sequenced. The nucleotide and amino acid sequence analysis and the one with serological data revealed the presence of three distinct allexiviruses GarV-C, GarV-D and a recently described allexivirus, named Garlic mite-borne filamentous virus (GarMbFV), in Brazil. |
publishDate |
2004 |
dc.date.none.fl_str_mv |
2004-08-01 |
dc.type.none.fl_str_mv |
|
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://seer.sct.embrapa.br/index.php/pab/article/view/6832 |
url |
https://seer.sct.embrapa.br/index.php/pab/article/view/6832 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://seer.sct.embrapa.br/index.php/pab/article/view/6832/3888 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira Pesquisa Agropecuária Brasileira |
publisher.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira Pesquisa Agropecuária Brasileira |
dc.source.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira; v.39, n.8, ago. 2004; 735-740 Pesquisa Agropecuária Brasileira; v.39, n.8, ago. 2004; 735-740 1678-3921 0100-104x reponame:Pesquisa Agropecuária Brasileira (Online) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Pesquisa Agropecuária Brasileira (Online) |
collection |
Pesquisa Agropecuária Brasileira (Online) |
repository.name.fl_str_mv |
Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
pab@sct.embrapa.br || sct.pab@embrapa.br |
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1793416675187490816 |