Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil

Detalhes bibliográficos
Autor(a) principal: Oliveira, Milena L. [UNESP]
Data de Publicação: 2014
Outros Autores: De Marchi, Bruno R. [UNESP], Mituti, Tatiana [UNESP], Pavan, Marcelo A. [UNESP], Krause-sakate, Renate [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/S1982-56762014000600011
http://hdl.handle.net/11449/114418
Resumo: Garlic plants are naturally infected by a mixture of viruses, including allexiviruses. Symptomatic garlic plants with mosaic and distorted leaves from garlic producing regions in Brazil were analyzed for the presence of Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C), Garlic virus D (GarV-D) and Garlic mite-borne filamentous virus (GarMbFV), five allexivirus species previously reported in the country. Fifty-nine virus isolates from five distinct allexivirus species were identified and the complete coat protein region of each genome was sequenced. Mixed infections were very frequent and corresponded to 43% of the positive samples. The nucleotide identity of the coat protein ranged between 75% and 98% for GarV-A isolates, 83% and 90% for GarV-B, 69% and 98% for GarV-C, 87% and 97% for GarV-D, and 72% and 91% for GarMbFV.
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spelling Identification and sequence analysis of five allexiviruses species infecting garlic crops in BrazilAllium sativummixed infectionvariabilityvirusGarlic plants are naturally infected by a mixture of viruses, including allexiviruses. Symptomatic garlic plants with mosaic and distorted leaves from garlic producing regions in Brazil were analyzed for the presence of Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C), Garlic virus D (GarV-D) and Garlic mite-borne filamentous virus (GarMbFV), five allexivirus species previously reported in the country. Fifty-nine virus isolates from five distinct allexivirus species were identified and the complete coat protein region of each genome was sequenced. Mixed infections were very frequent and corresponded to 43% of the positive samples. The nucleotide identity of the coat protein ranged between 75% and 98% for GarV-A isolates, 83% and 90% for GarV-B, 69% and 98% for GarV-C, 87% and 97% for GarV-D, and 72% and 91% for GarMbFV.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Universidade Estadual de São Paulo Faculdade de Ciências Agronômicas Departamento de Produção VegetalSociedade Brasileira de FitopatologiaUniversidade Estadual de São Paulo Faculdade de Ciências Agronômicas Departamento de Produção VegetalOliveira, Milena L. [UNESP]De Marchi, Bruno R. [UNESP]Mituti, Tatiana [UNESP]Pavan, Marcelo A. [UNESP]Krause-sakate, Renate [UNESP]2015-02-02T12:39:31Z2015-02-02T12:39:31Z2014-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article483-489application/pdfhttp://dx.doi.org/10.1590/S1982-56762014000600011Tropical Plant Pathology. Sociedade Brasileira de Fitopatologia, v. 39, n. 6, p. 483-489, 2014.1982-5676http://hdl.handle.net/11449/11441810.1590/S1982-56762014000600011S1982-56762014000600011S1982-56762014000600011.pdf9475664563362949SciELOreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTropical Plant Pathology0,401info:eu-repo/semantics/openAccess2024-04-30T15:59:41Zoai:repositorio.unesp.br:11449/114418Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T23:03:22.803887Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
title Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
spellingShingle Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
Oliveira, Milena L. [UNESP]
Allium sativum
mixed infection
variability
virus
title_short Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
title_full Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
title_fullStr Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
title_full_unstemmed Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
title_sort Identification and sequence analysis of five allexiviruses species infecting garlic crops in Brazil
author Oliveira, Milena L. [UNESP]
author_facet Oliveira, Milena L. [UNESP]
De Marchi, Bruno R. [UNESP]
Mituti, Tatiana [UNESP]
Pavan, Marcelo A. [UNESP]
Krause-sakate, Renate [UNESP]
author_role author
author2 De Marchi, Bruno R. [UNESP]
Mituti, Tatiana [UNESP]
Pavan, Marcelo A. [UNESP]
Krause-sakate, Renate [UNESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual de São Paulo Faculdade de Ciências Agronômicas Departamento de Produção Vegetal
dc.contributor.author.fl_str_mv Oliveira, Milena L. [UNESP]
De Marchi, Bruno R. [UNESP]
Mituti, Tatiana [UNESP]
Pavan, Marcelo A. [UNESP]
Krause-sakate, Renate [UNESP]
dc.subject.por.fl_str_mv Allium sativum
mixed infection
variability
virus
topic Allium sativum
mixed infection
variability
virus
description Garlic plants are naturally infected by a mixture of viruses, including allexiviruses. Symptomatic garlic plants with mosaic and distorted leaves from garlic producing regions in Brazil were analyzed for the presence of Garlic virus A (GarV-A), Garlic virus B (GarV-B), Garlic virus C (GarV-C), Garlic virus D (GarV-D) and Garlic mite-borne filamentous virus (GarMbFV), five allexivirus species previously reported in the country. Fifty-nine virus isolates from five distinct allexivirus species were identified and the complete coat protein region of each genome was sequenced. Mixed infections were very frequent and corresponded to 43% of the positive samples. The nucleotide identity of the coat protein ranged between 75% and 98% for GarV-A isolates, 83% and 90% for GarV-B, 69% and 98% for GarV-C, 87% and 97% for GarV-D, and 72% and 91% for GarMbFV.
publishDate 2014
dc.date.none.fl_str_mv 2014-12-01
2015-02-02T12:39:31Z
2015-02-02T12:39:31Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/S1982-56762014000600011
Tropical Plant Pathology. Sociedade Brasileira de Fitopatologia, v. 39, n. 6, p. 483-489, 2014.
1982-5676
http://hdl.handle.net/11449/114418
10.1590/S1982-56762014000600011
S1982-56762014000600011
S1982-56762014000600011.pdf
9475664563362949
url http://dx.doi.org/10.1590/S1982-56762014000600011
http://hdl.handle.net/11449/114418
identifier_str_mv Tropical Plant Pathology. Sociedade Brasileira de Fitopatologia, v. 39, n. 6, p. 483-489, 2014.
1982-5676
10.1590/S1982-56762014000600011
S1982-56762014000600011
S1982-56762014000600011.pdf
9475664563362949
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Tropical Plant Pathology
0,401
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 483-489
application/pdf
dc.publisher.none.fl_str_mv Sociedade Brasileira de Fitopatologia
publisher.none.fl_str_mv Sociedade Brasileira de Fitopatologia
dc.source.none.fl_str_mv SciELO
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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