Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
Main Author: | |
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Publication Date: | 2012 |
Other Authors: | , , , , , , , , , |
Format: | Article |
Language: | eng por |
Source: | Pesquisa Agropecuária Brasileira (Online) |
Download full: | https://seer.sct.embrapa.br/index.php/pab/article/view/12224 |
Summary: | The objective of this work was to estimate the genetic diversity of improved banana diploids using data from quantitative analysis and from simple sequence repeats (SSR) marker, simultaneously. The experiment was carried out with 33 diploids, in an augmented block design with 30 regular treatments and three common ones. Eighteen agronomic characteristics and 20 SSR primers were used. The agronomic characteristics and the SSR were analyzed simultaneously by the Ward‑MLM, cluster, and IML procedures. The Ward clustering method considered the combined matrix obtained by the Gower algorithm. The Ward‑MLM procedure identified three ideal groups (G1, G2, and G3) based on pseudo‑F and pseudo‑t2 statistics. The dendrogram showed relative similarity between the G1 genotypes, justified by genealogy. In G2, 'Calcutta 4' appears in 62% of the genealogies. Similar behavior was observed in G3, in which the 028003‑01 diploid is the male parent of the 086079‑10 and 042079‑06 genotypes. The method with canonical variables had greater discriminatory power than Ward‑MLM. Although reduced, the genetic variability available is sufficient to be used in the development of new hybrids. |
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Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM methodDiversidade genética entre diploides melhorados de bananeira por meio de variáveis canônicas e do método Ward‑MLMMusa; hybrids; microsatellites; morphological characteristicsMusa; híbridos; microssatélites; características morfológicasThe objective of this work was to estimate the genetic diversity of improved banana diploids using data from quantitative analysis and from simple sequence repeats (SSR) marker, simultaneously. The experiment was carried out with 33 diploids, in an augmented block design with 30 regular treatments and three common ones. Eighteen agronomic characteristics and 20 SSR primers were used. The agronomic characteristics and the SSR were analyzed simultaneously by the Ward‑MLM, cluster, and IML procedures. The Ward clustering method considered the combined matrix obtained by the Gower algorithm. The Ward‑MLM procedure identified three ideal groups (G1, G2, and G3) based on pseudo‑F and pseudo‑t2 statistics. The dendrogram showed relative similarity between the G1 genotypes, justified by genealogy. In G2, 'Calcutta 4' appears in 62% of the genealogies. Similar behavior was observed in G3, in which the 028003‑01 diploid is the male parent of the 086079‑10 and 042079‑06 genotypes. The method with canonical variables had greater discriminatory power than Ward‑MLM. Although reduced, the genetic variability available is sufficient to be used in the development of new hybrids.O objetivo deste trabalho foi estimar a diversidade genética entre diploides melhorados de bananeira por meio de dados quantitativos e de marcadores de sequências simples repetidas (SSR), simultaneamente. O experimento foi conduzido com 33 diploides, em blocos aumentados com 30 tratamentos regulares e três comuns. Dezoito características agronômicas e 20 iniciadores SSR foram usados. Os dados agronômicos e de SSR foram analisados, simultaneamente, via os procedimentos Ward‑MLM, de agrupamento e IML. O método de agrupamento de Ward considerou matriz híbrida obtida pelo algoritmo de Gower. O procedimento Ward‑MLM identificou três grupos (G1, G2 e G3) baseados nas estatísticas de pseudo‑F and pseudo‑t2. O dendrograma mostrou similaridade relativa entre os genótipos do G1, justificada pela genealogia. No G2, 'Calcutta 4' aparece em 62% das genealogias. Comportamento similar foi observado no grupo G3, em que o diploide 028003‑01 é o parental masculino dos genótipos 086079‑10 e 042079‑06. O método com uso de variáveis canônicas teve maior poder discriminatório que o Ward‑MLM. Embora reduzida, a variabilidade genética disponível é suficiente para ser usada no desenvolvimento de novos híbridos.Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraCNPq, Fapesb, BNB, EmbrapaPereira, Valquíria MartinsBorges, Cristine VanzBrandão, Lívia PintoOliveira, Larissa SantosSouza, Cintia Paula FeitosaGonçalves, Zalmar SantanaSilva, Sebastião de Oliveira eSantos-Serejo, Janay Almeida dosFerreira, Claudia FortesAmorim, Edson PeritoLedo, Carlos Alberto da Silva2012-11-29info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/12224Pesquisa Agropecuaria Brasileira; v.47, n.10, out. 2012; 1480-1488Pesquisa Agropecuária Brasileira; v.47, n.10, out. 2012; 1480-14881678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAengporhttps://seer.sct.embrapa.br/index.php/pab/article/view/12224/8144https://seer.sct.embrapa.br/index.php/pab/article/view/12224/8145https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/12224/7855info:eu-repo/semantics/openAccess2012-12-04T21:19:43Zoai:ojs.seer.sct.embrapa.br:article/12224Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2012-12-04T21:19:43Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method Diversidade genética entre diploides melhorados de bananeira por meio de variáveis canônicas e do método Ward‑MLM |
title |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method |
spellingShingle |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method Pereira, Valquíria Martins Musa; hybrids; microsatellites; morphological characteristics Musa; híbridos; microssatélites; características morfológicas |
title_short |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method |
title_full |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method |
title_fullStr |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method |
title_full_unstemmed |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method |
title_sort |
Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method |
author |
Pereira, Valquíria Martins |
author_facet |
Pereira, Valquíria Martins Borges, Cristine Vanz Brandão, Lívia Pinto Oliveira, Larissa Santos Souza, Cintia Paula Feitosa Gonçalves, Zalmar Santana Silva, Sebastião de Oliveira e Santos-Serejo, Janay Almeida dos Ferreira, Claudia Fortes Amorim, Edson Perito Ledo, Carlos Alberto da Silva |
author_role |
author |
author2 |
Borges, Cristine Vanz Brandão, Lívia Pinto Oliveira, Larissa Santos Souza, Cintia Paula Feitosa Gonçalves, Zalmar Santana Silva, Sebastião de Oliveira e Santos-Serejo, Janay Almeida dos Ferreira, Claudia Fortes Amorim, Edson Perito Ledo, Carlos Alberto da Silva |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
CNPq, Fapesb, BNB, Embrapa |
dc.contributor.author.fl_str_mv |
Pereira, Valquíria Martins Borges, Cristine Vanz Brandão, Lívia Pinto Oliveira, Larissa Santos Souza, Cintia Paula Feitosa Gonçalves, Zalmar Santana Silva, Sebastião de Oliveira e Santos-Serejo, Janay Almeida dos Ferreira, Claudia Fortes Amorim, Edson Perito Ledo, Carlos Alberto da Silva |
dc.subject.por.fl_str_mv |
Musa; hybrids; microsatellites; morphological characteristics Musa; híbridos; microssatélites; características morfológicas |
topic |
Musa; hybrids; microsatellites; morphological characteristics Musa; híbridos; microssatélites; características morfológicas |
description |
The objective of this work was to estimate the genetic diversity of improved banana diploids using data from quantitative analysis and from simple sequence repeats (SSR) marker, simultaneously. The experiment was carried out with 33 diploids, in an augmented block design with 30 regular treatments and three common ones. Eighteen agronomic characteristics and 20 SSR primers were used. The agronomic characteristics and the SSR were analyzed simultaneously by the Ward‑MLM, cluster, and IML procedures. The Ward clustering method considered the combined matrix obtained by the Gower algorithm. The Ward‑MLM procedure identified three ideal groups (G1, G2, and G3) based on pseudo‑F and pseudo‑t2 statistics. The dendrogram showed relative similarity between the G1 genotypes, justified by genealogy. In G2, 'Calcutta 4' appears in 62% of the genealogies. Similar behavior was observed in G3, in which the 028003‑01 diploid is the male parent of the 086079‑10 and 042079‑06 genotypes. The method with canonical variables had greater discriminatory power than Ward‑MLM. Although reduced, the genetic variability available is sufficient to be used in the development of new hybrids. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-11-29 |
dc.type.none.fl_str_mv |
|
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://seer.sct.embrapa.br/index.php/pab/article/view/12224 |
url |
https://seer.sct.embrapa.br/index.php/pab/article/view/12224 |
dc.language.iso.fl_str_mv |
eng por |
language |
eng por |
dc.relation.none.fl_str_mv |
https://seer.sct.embrapa.br/index.php/pab/article/view/12224/8144 https://seer.sct.embrapa.br/index.php/pab/article/view/12224/8145 https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/12224/7855 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira Pesquisa Agropecuária Brasileira |
publisher.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira Pesquisa Agropecuária Brasileira |
dc.source.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira; v.47, n.10, out. 2012; 1480-1488 Pesquisa Agropecuária Brasileira; v.47, n.10, out. 2012; 1480-1488 1678-3921 0100-104x reponame:Pesquisa Agropecuária Brasileira (Online) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Pesquisa Agropecuária Brasileira (Online) |
collection |
Pesquisa Agropecuária Brasileira (Online) |
repository.name.fl_str_mv |
Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
pab@sct.embrapa.br || sct.pab@embrapa.br |
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1793416652299173888 |