Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method

Bibliographic Details
Main Author: Pereira, Valquíria Martins
Publication Date: 2012
Other Authors: Borges, Cristine Vanz, Brandão, Lívia Pinto, Oliveira, Larissa Santos, Souza, Cintia Paula Feitosa, Gonçalves, Zalmar Santana, Silva, Sebastião de Oliveira e, Santos-Serejo, Janay Almeida dos, Ferreira, Claudia Fortes, Amorim, Edson Perito, Ledo, Carlos Alberto da Silva
Format: Article
Language: eng
por
Source: Pesquisa Agropecuária Brasileira (Online)
Download full: https://seer.sct.embrapa.br/index.php/pab/article/view/12224
Summary: The objective of this work was to estimate the genetic diversity of improved banana diploids using data from quantitative analysis and from simple sequence repeats (SSR) marker, simultaneously. The experiment was carried out with 33 diploids, in an augmented block design with 30 regular treatments and three common ones. Eighteen agronomic characteristics and 20 SSR primers were used. The agronomic characteristics and the SSR were analyzed simultaneously by the Ward‑MLM, cluster, and IML procedures. The Ward clustering method considered the combined matrix obtained by the Gower algorithm. The Ward‑MLM procedure identified three ideal groups (G1, G2, and G3) based on pseudo‑F and pseudo‑t2 statistics. The dendrogram showed relative similarity between the G1 genotypes, justified by genealogy. In G2, 'Calcutta 4' appears in 62% of the genealogies. Similar behavior was observed in G3, in which the 028003‑01 diploid is the male parent of the 086079‑10 and 042079‑06 genotypes. The method with canonical variables had greater discriminatory power than Ward‑MLM. Although reduced, the genetic variability available is sufficient to be used in the development of new hybrids.
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spelling Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM methodDiversidade genética entre diploides melhorados de bananeira por meio de variáveis canônicas e do método Ward‑MLMMusa; hybrids; microsatellites; morphological characteristicsMusa; híbridos; microssatélites; características morfológicasThe objective of this work was to estimate the genetic diversity of improved banana diploids using data from quantitative analysis and from simple sequence repeats (SSR) marker, simultaneously. The experiment was carried out with 33 diploids, in an augmented block design with 30 regular treatments and three common ones. Eighteen agronomic characteristics and 20 SSR primers were used. The agronomic characteristics and the SSR were analyzed simultaneously by the Ward‑MLM, cluster, and IML procedures. The Ward clustering method considered the combined matrix obtained by the Gower algorithm. The Ward‑MLM procedure identified three ideal groups (G1, G2, and G3) based on pseudo‑F and pseudo‑t2 statistics. The dendrogram showed relative similarity between the G1 genotypes, justified by genealogy. In G2, 'Calcutta 4' appears in 62% of the genealogies. Similar behavior was observed in G3, in which the 028003‑01 diploid is the male parent of the 086079‑10 and 042079‑06 genotypes. The method with canonical variables had greater discriminatory power than Ward‑MLM. Although reduced, the genetic variability available is sufficient to be used in the development of new hybrids.O objetivo deste trabalho foi estimar a diversidade genética entre diploides melhorados de bananeira por meio de dados quantitativos e de marcadores de sequências simples repetidas (SSR), simultaneamente. O experimento foi conduzido com 33 diploides, em blocos aumentados com 30 tratamentos regulares e três comuns. Dezoito características agronômicas e 20 iniciadores SSR foram usados. Os dados agronômicos e de SSR foram analisados, simultaneamente, via os procedimentos Ward‑MLM, de agrupamento e IML. O método de agrupamento de Ward considerou matriz híbrida obtida pelo algoritmo de Gower. O procedimento Ward‑MLM identificou três grupos (G1, G2 e G3) baseados nas estatísticas de pseudo‑F and pseudo‑t2. O dendrograma mostrou similaridade relativa entre os genótipos do G1, justificada pela genealogia. No G2, 'Calcutta 4' aparece em 62% das genealogias. Comportamento similar foi observado no grupo G3, em que o diploide 028003‑01 é o parental masculino dos genótipos 086079‑10 e 042079‑06. O método com uso de variáveis canônicas teve maior poder discriminatório que o Ward‑MLM. Embora reduzida, a variabilidade genética disponível é suficiente para ser usada no desenvolvimento de novos híbridos.Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraCNPq, Fapesb, BNB, EmbrapaPereira, Valquíria MartinsBorges, Cristine VanzBrandão, Lívia PintoOliveira, Larissa SantosSouza, Cintia Paula FeitosaGonçalves, Zalmar SantanaSilva, Sebastião de Oliveira eSantos-Serejo, Janay Almeida dosFerreira, Claudia FortesAmorim, Edson PeritoLedo, Carlos Alberto da Silva2012-11-29info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/12224Pesquisa Agropecuaria Brasileira; v.47, n.10, out. 2012; 1480-1488Pesquisa Agropecuária Brasileira; v.47, n.10, out. 2012; 1480-14881678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAengporhttps://seer.sct.embrapa.br/index.php/pab/article/view/12224/8144https://seer.sct.embrapa.br/index.php/pab/article/view/12224/8145https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/12224/7855info:eu-repo/semantics/openAccess2012-12-04T21:19:43Zoai:ojs.seer.sct.embrapa.br:article/12224Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2012-12-04T21:19:43Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
Diversidade genética entre diploides melhorados de bananeira por meio de variáveis canônicas e do método Ward‑MLM
title Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
spellingShingle Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
Pereira, Valquíria Martins
Musa; hybrids; microsatellites; morphological characteristics
Musa; híbridos; microssatélites; características morfológicas
title_short Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
title_full Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
title_fullStr Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
title_full_unstemmed Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
title_sort Genetic diversity between improved banana diploids using canonical variables and the Ward‑MLM method
author Pereira, Valquíria Martins
author_facet Pereira, Valquíria Martins
Borges, Cristine Vanz
Brandão, Lívia Pinto
Oliveira, Larissa Santos
Souza, Cintia Paula Feitosa
Gonçalves, Zalmar Santana
Silva, Sebastião de Oliveira e
Santos-Serejo, Janay Almeida dos
Ferreira, Claudia Fortes
Amorim, Edson Perito
Ledo, Carlos Alberto da Silva
author_role author
author2 Borges, Cristine Vanz
Brandão, Lívia Pinto
Oliveira, Larissa Santos
Souza, Cintia Paula Feitosa
Gonçalves, Zalmar Santana
Silva, Sebastião de Oliveira e
Santos-Serejo, Janay Almeida dos
Ferreira, Claudia Fortes
Amorim, Edson Perito
Ledo, Carlos Alberto da Silva
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv CNPq, Fapesb, BNB, Embrapa

dc.contributor.author.fl_str_mv Pereira, Valquíria Martins
Borges, Cristine Vanz
Brandão, Lívia Pinto
Oliveira, Larissa Santos
Souza, Cintia Paula Feitosa
Gonçalves, Zalmar Santana
Silva, Sebastião de Oliveira e
Santos-Serejo, Janay Almeida dos
Ferreira, Claudia Fortes
Amorim, Edson Perito
Ledo, Carlos Alberto da Silva
dc.subject.por.fl_str_mv Musa; hybrids; microsatellites; morphological characteristics
Musa; híbridos; microssatélites; características morfológicas
topic Musa; hybrids; microsatellites; morphological characteristics
Musa; híbridos; microssatélites; características morfológicas
description The objective of this work was to estimate the genetic diversity of improved banana diploids using data from quantitative analysis and from simple sequence repeats (SSR) marker, simultaneously. The experiment was carried out with 33 diploids, in an augmented block design with 30 regular treatments and three common ones. Eighteen agronomic characteristics and 20 SSR primers were used. The agronomic characteristics and the SSR were analyzed simultaneously by the Ward‑MLM, cluster, and IML procedures. The Ward clustering method considered the combined matrix obtained by the Gower algorithm. The Ward‑MLM procedure identified three ideal groups (G1, G2, and G3) based on pseudo‑F and pseudo‑t2 statistics. The dendrogram showed relative similarity between the G1 genotypes, justified by genealogy. In G2, 'Calcutta 4' appears in 62% of the genealogies. Similar behavior was observed in G3, in which the 028003‑01 diploid is the male parent of the 086079‑10 and 042079‑06 genotypes. The method with canonical variables had greater discriminatory power than Ward‑MLM. Although reduced, the genetic variability available is sufficient to be used in the development of new hybrids.
publishDate 2012
dc.date.none.fl_str_mv 2012-11-29
dc.type.none.fl_str_mv
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/12224
url https://seer.sct.embrapa.br/index.php/pab/article/view/12224
dc.language.iso.fl_str_mv eng
por
language eng
por
dc.relation.none.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/12224/8144
https://seer.sct.embrapa.br/index.php/pab/article/view/12224/8145
https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/12224/7855
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
dc.source.none.fl_str_mv Pesquisa Agropecuaria Brasileira; v.47, n.10, out. 2012; 1480-1488
Pesquisa Agropecuária Brasileira; v.47, n.10, out. 2012; 1480-1488
1678-3921
0100-104x
reponame:Pesquisa Agropecuária Brasileira (Online)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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repository.name.fl_str_mv Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv pab@sct.embrapa.br || sct.pab@embrapa.br
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