Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.

Detalhes bibliográficos
Autor(a) principal: IVAMOTO, S. T.
Data de Publicação: 2015
Outros Autores: DOMINGUES, D. S., VIEIRA, L. G. E., PEREIRA, L. F. P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979
Resumo: Cytochrome P450s (P450s) comprise a gene superfamily encoding enzymes that are involved in diverse plant metabolic pathways that produce primary and secondary metabolites such as phenylpropanoids, terpenoids, nitrogen-containing compounds, and plant hormones. They comprise one of the most diverse gene families in plant evolution. Although there are many studies that aim to characterize P450s in plants, there is no report on the characterization of this superfamily in Coffea arabica, where they might be related to plant tolerance to biotic and abiotic stresses, as well as aroma-related compounds. In this study, we report the characterization and annotation of 87 putative P450s from C. arabica obtained from the Brazilian Coffee Genome Project and describe their transcriptional pattern in different tissues and coffee organs. To validate our approach, we measured the transcriptional profile of the CaCYP81D8_1 geneby quantitative polymerase chain reaction in leaves, flowers, and fruits.This study is the first effort to present and analyze the P450 superfamily in C. arabica, which may assist in understanding the chemical diversity of coffee secondary metabolites.
id EMBR_232319f5f5d89da5f69742079cbad847
oai_identifier_str oai:www.alice.cnptia.embrapa.br:doc/1039979
network_acronym_str EMBR
network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository_id_str 2154
spelling Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.Expressed sequence tags (ESTs)Candidate genesCoffea arábicaCytochrome P-450TranscriptomeCytochrome P450s (P450s) comprise a gene superfamily encoding enzymes that are involved in diverse plant metabolic pathways that produce primary and secondary metabolites such as phenylpropanoids, terpenoids, nitrogen-containing compounds, and plant hormones. They comprise one of the most diverse gene families in plant evolution. Although there are many studies that aim to characterize P450s in plants, there is no report on the characterization of this superfamily in Coffea arabica, where they might be related to plant tolerance to biotic and abiotic stresses, as well as aroma-related compounds. In this study, we report the characterization and annotation of 87 putative P450s from C. arabica obtained from the Brazilian Coffee Genome Project and describe their transcriptional pattern in different tissues and coffee organs. To validate our approach, we measured the transcriptional profile of the CaCYP81D8_1 geneby quantitative polymerase chain reaction in leaves, flowers, and fruits.This study is the first effort to present and analyze the P450 superfamily in C. arabica, which may assist in understanding the chemical diversity of coffee secondary metabolites.IAPAR; IAPAR; Universidade do Oeste Paulista; LUIZ FILIPE PROTASIO PEREIRA, SAPC.IVAMOTO, S. T.DOMINGUES, D. S.VIEIRA, L. G. E.PEREIRA, L. F. P.2016-03-08T11:11:11Z2016-03-08T11:11:11Z2016-03-0820152016-03-10T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 14, n. 1, p. 2399-2412, 2015http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:38:55Zoai:www.alice.cnptia.embrapa.br:doc/1039979Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:38:55falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:38:55Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
title Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
spellingShingle Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
IVAMOTO, S. T.
Expressed sequence tags (ESTs)
Candidate genes
Coffea arábica
Cytochrome P-450
Transcriptome
title_short Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
title_full Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
title_fullStr Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
title_full_unstemmed Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
title_sort Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
author IVAMOTO, S. T.
author_facet IVAMOTO, S. T.
DOMINGUES, D. S.
VIEIRA, L. G. E.
PEREIRA, L. F. P.
author_role author
author2 DOMINGUES, D. S.
VIEIRA, L. G. E.
PEREIRA, L. F. P.
author2_role author
author
author
dc.contributor.none.fl_str_mv IAPAR; IAPAR; Universidade do Oeste Paulista; LUIZ FILIPE PROTASIO PEREIRA, SAPC.
dc.contributor.author.fl_str_mv IVAMOTO, S. T.
DOMINGUES, D. S.
VIEIRA, L. G. E.
PEREIRA, L. F. P.
dc.subject.por.fl_str_mv Expressed sequence tags (ESTs)
Candidate genes
Coffea arábica
Cytochrome P-450
Transcriptome
topic Expressed sequence tags (ESTs)
Candidate genes
Coffea arábica
Cytochrome P-450
Transcriptome
description Cytochrome P450s (P450s) comprise a gene superfamily encoding enzymes that are involved in diverse plant metabolic pathways that produce primary and secondary metabolites such as phenylpropanoids, terpenoids, nitrogen-containing compounds, and plant hormones. They comprise one of the most diverse gene families in plant evolution. Although there are many studies that aim to characterize P450s in plants, there is no report on the characterization of this superfamily in Coffea arabica, where they might be related to plant tolerance to biotic and abiotic stresses, as well as aroma-related compounds. In this study, we report the characterization and annotation of 87 putative P450s from C. arabica obtained from the Brazilian Coffee Genome Project and describe their transcriptional pattern in different tissues and coffee organs. To validate our approach, we measured the transcriptional profile of the CaCYP81D8_1 geneby quantitative polymerase chain reaction in leaves, flowers, and fruits.This study is the first effort to present and analyze the P450 superfamily in C. arabica, which may assist in understanding the chemical diversity of coffee secondary metabolites.
publishDate 2015
dc.date.none.fl_str_mv 2015
2016-03-08T11:11:11Z
2016-03-08T11:11:11Z
2016-03-08
2016-03-10T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 14, n. 1, p. 2399-2412, 2015
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979
identifier_str_mv Genetics and Molecular Research, v. 14, n. 1, p. 2399-2412, 2015
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1794503419245887488