Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979 |
Resumo: | Cytochrome P450s (P450s) comprise a gene superfamily encoding enzymes that are involved in diverse plant metabolic pathways that produce primary and secondary metabolites such as phenylpropanoids, terpenoids, nitrogen-containing compounds, and plant hormones. They comprise one of the most diverse gene families in plant evolution. Although there are many studies that aim to characterize P450s in plants, there is no report on the characterization of this superfamily in Coffea arabica, where they might be related to plant tolerance to biotic and abiotic stresses, as well as aroma-related compounds. In this study, we report the characterization and annotation of 87 putative P450s from C. arabica obtained from the Brazilian Coffee Genome Project and describe their transcriptional pattern in different tissues and coffee organs. To validate our approach, we measured the transcriptional profile of the CaCYP81D8_1 geneby quantitative polymerase chain reaction in leaves, flowers, and fruits.This study is the first effort to present and analyze the P450 superfamily in C. arabica, which may assist in understanding the chemical diversity of coffee secondary metabolites. |
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Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica.Expressed sequence tags (ESTs)Candidate genesCoffea arábicaCytochrome P-450TranscriptomeCytochrome P450s (P450s) comprise a gene superfamily encoding enzymes that are involved in diverse plant metabolic pathways that produce primary and secondary metabolites such as phenylpropanoids, terpenoids, nitrogen-containing compounds, and plant hormones. They comprise one of the most diverse gene families in plant evolution. Although there are many studies that aim to characterize P450s in plants, there is no report on the characterization of this superfamily in Coffea arabica, where they might be related to plant tolerance to biotic and abiotic stresses, as well as aroma-related compounds. In this study, we report the characterization and annotation of 87 putative P450s from C. arabica obtained from the Brazilian Coffee Genome Project and describe their transcriptional pattern in different tissues and coffee organs. To validate our approach, we measured the transcriptional profile of the CaCYP81D8_1 geneby quantitative polymerase chain reaction in leaves, flowers, and fruits.This study is the first effort to present and analyze the P450 superfamily in C. arabica, which may assist in understanding the chemical diversity of coffee secondary metabolites.IAPAR; IAPAR; Universidade do Oeste Paulista; LUIZ FILIPE PROTASIO PEREIRA, SAPC.IVAMOTO, S. T.DOMINGUES, D. S.VIEIRA, L. G. E.PEREIRA, L. F. P.2016-03-08T11:11:11Z2016-03-08T11:11:11Z2016-03-0820152016-03-10T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 14, n. 1, p. 2399-2412, 2015http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:38:55Zoai:www.alice.cnptia.embrapa.br:doc/1039979Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:38:55falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:38:55Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
title |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
spellingShingle |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. IVAMOTO, S. T. Expressed sequence tags (ESTs) Candidate genes Coffea arábica Cytochrome P-450 Transcriptome |
title_short |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
title_full |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
title_fullStr |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
title_full_unstemmed |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
title_sort |
Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica. |
author |
IVAMOTO, S. T. |
author_facet |
IVAMOTO, S. T. DOMINGUES, D. S. VIEIRA, L. G. E. PEREIRA, L. F. P. |
author_role |
author |
author2 |
DOMINGUES, D. S. VIEIRA, L. G. E. PEREIRA, L. F. P. |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
IAPAR; IAPAR; Universidade do Oeste Paulista; LUIZ FILIPE PROTASIO PEREIRA, SAPC. |
dc.contributor.author.fl_str_mv |
IVAMOTO, S. T. DOMINGUES, D. S. VIEIRA, L. G. E. PEREIRA, L. F. P. |
dc.subject.por.fl_str_mv |
Expressed sequence tags (ESTs) Candidate genes Coffea arábica Cytochrome P-450 Transcriptome |
topic |
Expressed sequence tags (ESTs) Candidate genes Coffea arábica Cytochrome P-450 Transcriptome |
description |
Cytochrome P450s (P450s) comprise a gene superfamily encoding enzymes that are involved in diverse plant metabolic pathways that produce primary and secondary metabolites such as phenylpropanoids, terpenoids, nitrogen-containing compounds, and plant hormones. They comprise one of the most diverse gene families in plant evolution. Although there are many studies that aim to characterize P450s in plants, there is no report on the characterization of this superfamily in Coffea arabica, where they might be related to plant tolerance to biotic and abiotic stresses, as well as aroma-related compounds. In this study, we report the characterization and annotation of 87 putative P450s from C. arabica obtained from the Brazilian Coffee Genome Project and describe their transcriptional pattern in different tissues and coffee organs. To validate our approach, we measured the transcriptional profile of the CaCYP81D8_1 geneby quantitative polymerase chain reaction in leaves, flowers, and fruits.This study is the first effort to present and analyze the P450 superfamily in C. arabica, which may assist in understanding the chemical diversity of coffee secondary metabolites. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015 2016-03-08T11:11:11Z 2016-03-08T11:11:11Z 2016-03-08 2016-03-10T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Research, v. 14, n. 1, p. 2399-2412, 2015 http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979 |
identifier_str_mv |
Genetics and Molecular Research, v. 14, n. 1, p. 2399-2412, 2015 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1039979 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503419245887488 |