Transferability of microsatellite loci in Coffea canephora.
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125191 |
Resumo: | Coffee is one of the most important international trade commodities. Good prospects presented by the application of SSR markers to access the diversity in Coffea, and the small number of SSR primers available for C. canephora, encouraged the realization of this study. Thus, we tested the heterologous amplification of 71 microsatellite markers, originally developed for Coffea arabica, in Coffea canephora. Heterologous amplification occurred with 38 of the 71 primers. Approximately 52.63% of the primers used were polymorphic; 35% of the primer sets were classified as non-informative, 50% as moderately informative and 15% as highly informative. The loci evaluated by SSRCa 088, M793, SSRCa 054, SSRCa 085, CM5, M25, CFGA54 were low informative; SSRCa 084, SSRCa 052 and SSRCa 040 were highly informative. The validated primer sets can be used in molecular studies for different purposes once they were efficient in the genotypes discrimination. |
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Transferability of microsatellite loci in Coffea canephora.TransferabilityMolecular markersMolecular characterizationSSRCaféCoffee (beverage)Coffee is one of the most important international trade commodities. Good prospects presented by the application of SSR markers to access the diversity in Coffea, and the small number of SSR primers available for C. canephora, encouraged the realization of this study. Thus, we tested the heterologous amplification of 71 microsatellite markers, originally developed for Coffea arabica, in Coffea canephora. Heterologous amplification occurred with 38 of the 71 primers. Approximately 52.63% of the primers used were polymorphic; 35% of the primer sets were classified as non-informative, 50% as moderately informative and 15% as highly informative. The loci evaluated by SSRCa 088, M793, SSRCa 054, SSRCa 085, CM5, M25, CFGA54 were low informative; SSRCa 084, SSRCa 052 and SSRCa 040 were highly informative. The validated primer sets can be used in molecular studies for different purposes once they were efficient in the genotypes discrimination.Ludymila Brandão Motta, Universidade Federal do Espírito Santo; Taís Cristina Bastos Soares, Universidade Federal do Espírito Santo; MARIA AMELIA GAVA FERRAO, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Ronald Martins Pereira Júnior, Universidade Federal do Espírito Santo; Rodrigo Monte Lorenzoni, Universidade Federal do Espírito Santo.MOTTA, L. B.SOARES, T. C. B.FERRAO, M. A. G.CAIXETA, E. T.PEREIRA JÚNIOR, R. M.LORENZONI, R. M.2020-10-08T09:13:00Z2020-10-08T09:13:00Z2020-09-302014info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAustralian Journal of Crop Science, v. 8 , n. 6, p. 987-991 , 2014.1835-2707http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125191enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-10-08T09:13:10Zoai:www.alice.cnptia.embrapa.br:doc/1125191Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-10-08T09:13:10falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-10-08T09:13:10Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Transferability of microsatellite loci in Coffea canephora. |
title |
Transferability of microsatellite loci in Coffea canephora. |
spellingShingle |
Transferability of microsatellite loci in Coffea canephora. MOTTA, L. B. Transferability Molecular markers Molecular characterization SSR Café Coffee (beverage) |
title_short |
Transferability of microsatellite loci in Coffea canephora. |
title_full |
Transferability of microsatellite loci in Coffea canephora. |
title_fullStr |
Transferability of microsatellite loci in Coffea canephora. |
title_full_unstemmed |
Transferability of microsatellite loci in Coffea canephora. |
title_sort |
Transferability of microsatellite loci in Coffea canephora. |
author |
MOTTA, L. B. |
author_facet |
MOTTA, L. B. SOARES, T. C. B. FERRAO, M. A. G. CAIXETA, E. T. PEREIRA JÚNIOR, R. M. LORENZONI, R. M. |
author_role |
author |
author2 |
SOARES, T. C. B. FERRAO, M. A. G. CAIXETA, E. T. PEREIRA JÚNIOR, R. M. LORENZONI, R. M. |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Ludymila Brandão Motta, Universidade Federal do Espírito Santo; Taís Cristina Bastos Soares, Universidade Federal do Espírito Santo; MARIA AMELIA GAVA FERRAO, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Ronald Martins Pereira Júnior, Universidade Federal do Espírito Santo; Rodrigo Monte Lorenzoni, Universidade Federal do Espírito Santo. |
dc.contributor.author.fl_str_mv |
MOTTA, L. B. SOARES, T. C. B. FERRAO, M. A. G. CAIXETA, E. T. PEREIRA JÚNIOR, R. M. LORENZONI, R. M. |
dc.subject.por.fl_str_mv |
Transferability Molecular markers Molecular characterization SSR Café Coffee (beverage) |
topic |
Transferability Molecular markers Molecular characterization SSR Café Coffee (beverage) |
description |
Coffee is one of the most important international trade commodities. Good prospects presented by the application of SSR markers to access the diversity in Coffea, and the small number of SSR primers available for C. canephora, encouraged the realization of this study. Thus, we tested the heterologous amplification of 71 microsatellite markers, originally developed for Coffea arabica, in Coffea canephora. Heterologous amplification occurred with 38 of the 71 primers. Approximately 52.63% of the primers used were polymorphic; 35% of the primer sets were classified as non-informative, 50% as moderately informative and 15% as highly informative. The loci evaluated by SSRCa 088, M793, SSRCa 054, SSRCa 085, CM5, M25, CFGA54 were low informative; SSRCa 084, SSRCa 052 and SSRCa 040 were highly informative. The validated primer sets can be used in molecular studies for different purposes once they were efficient in the genotypes discrimination. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014 2020-10-08T09:13:00Z 2020-10-08T09:13:00Z 2020-09-30 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Australian Journal of Crop Science, v. 8 , n. 6, p. 987-991 , 2014. 1835-2707 http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125191 |
identifier_str_mv |
Australian Journal of Crop Science, v. 8 , n. 6, p. 987-991 , 2014. 1835-2707 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125191 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503496387526656 |