Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)

Detalhes bibliográficos
Autor(a) principal: MIOTTO, Y. E.
Data de Publicação: 2019
Outros Autores: TESSELE, C., CZERMAINSKI, A. B. C., PORTO, D. D., FALAVIGNA, V. da S., SARTOR, T., CATTANI, A. M., DELATORRE, C. A., ALENCAR, S. A. de, SILVA JUNIOR, O. B. da, TOGAWA, R. C., COSTA, M. M. do C., PAPPAS JÚNIOR, G. J., GRYNBERG, P., OLIVEIRA, P. R. D. de, KVITSCHAL, M. V., DENARDI, F., BUFFON, V., REVERS, L. F.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109789
Resumo: Chilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees.
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spelling Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)Bud dormancyLinkage mappingMdoFLCMdoICE1MdoPRE1ApplesChilling requirementChilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees.YOHANNA EVELYN MIOTTO, UFRGS; CAROLINA TESSELE, UFRGS; ANA BEATRIZ COSTA CZERMAINSKI, CNPUV; DIOGO DENARDI PORTO, CPATSA; VÍTOR DA SILVEIRA FALAVIGNA, UFRGS; TIAGO SARTOR, UFRGS; AMANDA MALVESSI CATTANI, UFRGS; CARLA ANDREA DELATORRE, UFRGS; SÉRGIO AMORIM DE ALENCAR, UCB; ORZENIL BONFIM DA SILVA JUNIOR, Cenargen; ROBERTO COITI TOGAWA, Cenargen; MARCOS MOTA DO CARMO COSTA, Cenargen; GEORGIOS JOANNIS PAPPAS JÚNIOR, UNB; PRISCILA GRYNBERG, Cenargen; PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; MARCUS VINÍCIUS KVITSCHAL, EPAGRI; FREDERICO DENARDI, EPAGRI; VANESSA BUFFON, CNPUV; LUÍS FERNANDO REVERS, UFRGS.MIOTTO, Y. E.TESSELE, C.CZERMAINSKI, A. B. C.PORTO, D. D.FALAVIGNA, V. da S.SARTOR, T.CATTANI, A. M.DELATORRE, C. A.ALENCAR, S. A. deSILVA JUNIOR, O. B. daTOGAWA, R. C.COSTA, M. M. do C.PAPPAS JÚNIOR, G. J.GRYNBERG, P.OLIVEIRA, P. R. D. deKVITSCHAL, M. V.DENARDI, F.BUFFON, V.REVERS, L. F.2019-06-12T00:39:12Z2019-06-12T00:39:12Z2019-06-1120192020-01-06T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFrontiers in Plant Science, v. 10, article 33, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/110978910.3389/fpls.2019.00033enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-06-12T00:39:18Zoai:www.alice.cnptia.embrapa.br:doc/1109789Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-06-12T00:39:18falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-06-12T00:39:18Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
title Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
spellingShingle Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
MIOTTO, Y. E.
Bud dormancy
Linkage mapping
MdoFLC
MdoICE1
MdoPRE1
Apples
Chilling requirement
title_short Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
title_full Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
title_fullStr Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
title_full_unstemmed Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
title_sort Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
author MIOTTO, Y. E.
author_facet MIOTTO, Y. E.
TESSELE, C.
CZERMAINSKI, A. B. C.
PORTO, D. D.
FALAVIGNA, V. da S.
SARTOR, T.
CATTANI, A. M.
DELATORRE, C. A.
ALENCAR, S. A. de
SILVA JUNIOR, O. B. da
TOGAWA, R. C.
COSTA, M. M. do C.
PAPPAS JÚNIOR, G. J.
GRYNBERG, P.
OLIVEIRA, P. R. D. de
KVITSCHAL, M. V.
DENARDI, F.
BUFFON, V.
REVERS, L. F.
author_role author
author2 TESSELE, C.
CZERMAINSKI, A. B. C.
PORTO, D. D.
FALAVIGNA, V. da S.
SARTOR, T.
CATTANI, A. M.
DELATORRE, C. A.
ALENCAR, S. A. de
SILVA JUNIOR, O. B. da
TOGAWA, R. C.
COSTA, M. M. do C.
PAPPAS JÚNIOR, G. J.
GRYNBERG, P.
OLIVEIRA, P. R. D. de
KVITSCHAL, M. V.
DENARDI, F.
BUFFON, V.
REVERS, L. F.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv YOHANNA EVELYN MIOTTO, UFRGS; CAROLINA TESSELE, UFRGS; ANA BEATRIZ COSTA CZERMAINSKI, CNPUV; DIOGO DENARDI PORTO, CPATSA; VÍTOR DA SILVEIRA FALAVIGNA, UFRGS; TIAGO SARTOR, UFRGS; AMANDA MALVESSI CATTANI, UFRGS; CARLA ANDREA DELATORRE, UFRGS; SÉRGIO AMORIM DE ALENCAR, UCB; ORZENIL BONFIM DA SILVA JUNIOR, Cenargen; ROBERTO COITI TOGAWA, Cenargen; MARCOS MOTA DO CARMO COSTA, Cenargen; GEORGIOS JOANNIS PAPPAS JÚNIOR, UNB; PRISCILA GRYNBERG, Cenargen; PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; MARCUS VINÍCIUS KVITSCHAL, EPAGRI; FREDERICO DENARDI, EPAGRI; VANESSA BUFFON, CNPUV; LUÍS FERNANDO REVERS, UFRGS.
dc.contributor.author.fl_str_mv MIOTTO, Y. E.
TESSELE, C.
CZERMAINSKI, A. B. C.
PORTO, D. D.
FALAVIGNA, V. da S.
SARTOR, T.
CATTANI, A. M.
DELATORRE, C. A.
ALENCAR, S. A. de
SILVA JUNIOR, O. B. da
TOGAWA, R. C.
COSTA, M. M. do C.
PAPPAS JÚNIOR, G. J.
GRYNBERG, P.
OLIVEIRA, P. R. D. de
KVITSCHAL, M. V.
DENARDI, F.
BUFFON, V.
REVERS, L. F.
dc.subject.por.fl_str_mv Bud dormancy
Linkage mapping
MdoFLC
MdoICE1
MdoPRE1
Apples
Chilling requirement
topic Bud dormancy
Linkage mapping
MdoFLC
MdoICE1
MdoPRE1
Apples
Chilling requirement
description Chilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees.
publishDate 2019
dc.date.none.fl_str_mv 2019-06-12T00:39:12Z
2019-06-12T00:39:12Z
2019-06-11
2019
2020-01-06T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Frontiers in Plant Science, v. 10, article 33, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109789
10.3389/fpls.2019.00033
identifier_str_mv Frontiers in Plant Science, v. 10, article 33, 2019.
10.3389/fpls.2019.00033
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109789
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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