Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109789 |
Resumo: | Chilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees. |
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Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.)Bud dormancyLinkage mappingMdoFLCMdoICE1MdoPRE1ApplesChilling requirementChilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees.YOHANNA EVELYN MIOTTO, UFRGS; CAROLINA TESSELE, UFRGS; ANA BEATRIZ COSTA CZERMAINSKI, CNPUV; DIOGO DENARDI PORTO, CPATSA; VÍTOR DA SILVEIRA FALAVIGNA, UFRGS; TIAGO SARTOR, UFRGS; AMANDA MALVESSI CATTANI, UFRGS; CARLA ANDREA DELATORRE, UFRGS; SÉRGIO AMORIM DE ALENCAR, UCB; ORZENIL BONFIM DA SILVA JUNIOR, Cenargen; ROBERTO COITI TOGAWA, Cenargen; MARCOS MOTA DO CARMO COSTA, Cenargen; GEORGIOS JOANNIS PAPPAS JÚNIOR, UNB; PRISCILA GRYNBERG, Cenargen; PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; MARCUS VINÍCIUS KVITSCHAL, EPAGRI; FREDERICO DENARDI, EPAGRI; VANESSA BUFFON, CNPUV; LUÍS FERNANDO REVERS, UFRGS.MIOTTO, Y. E.TESSELE, C.CZERMAINSKI, A. B. C.PORTO, D. D.FALAVIGNA, V. da S.SARTOR, T.CATTANI, A. M.DELATORRE, C. A.ALENCAR, S. A. deSILVA JUNIOR, O. B. daTOGAWA, R. C.COSTA, M. M. do C.PAPPAS JÚNIOR, G. J.GRYNBERG, P.OLIVEIRA, P. R. D. deKVITSCHAL, M. V.DENARDI, F.BUFFON, V.REVERS, L. F.2019-06-12T00:39:12Z2019-06-12T00:39:12Z2019-06-1120192020-01-06T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFrontiers in Plant Science, v. 10, article 33, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/110978910.3389/fpls.2019.00033enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-06-12T00:39:18Zoai:www.alice.cnptia.embrapa.br:doc/1109789Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-06-12T00:39:18falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-06-12T00:39:18Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
title |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
spellingShingle |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) MIOTTO, Y. E. Bud dormancy Linkage mapping MdoFLC MdoICE1 MdoPRE1 Apples Chilling requirement |
title_short |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
title_full |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
title_fullStr |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
title_full_unstemmed |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
title_sort |
Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) |
author |
MIOTTO, Y. E. |
author_facet |
MIOTTO, Y. E. TESSELE, C. CZERMAINSKI, A. B. C. PORTO, D. D. FALAVIGNA, V. da S. SARTOR, T. CATTANI, A. M. DELATORRE, C. A. ALENCAR, S. A. de SILVA JUNIOR, O. B. da TOGAWA, R. C. COSTA, M. M. do C. PAPPAS JÚNIOR, G. J. GRYNBERG, P. OLIVEIRA, P. R. D. de KVITSCHAL, M. V. DENARDI, F. BUFFON, V. REVERS, L. F. |
author_role |
author |
author2 |
TESSELE, C. CZERMAINSKI, A. B. C. PORTO, D. D. FALAVIGNA, V. da S. SARTOR, T. CATTANI, A. M. DELATORRE, C. A. ALENCAR, S. A. de SILVA JUNIOR, O. B. da TOGAWA, R. C. COSTA, M. M. do C. PAPPAS JÚNIOR, G. J. GRYNBERG, P. OLIVEIRA, P. R. D. de KVITSCHAL, M. V. DENARDI, F. BUFFON, V. REVERS, L. F. |
author2_role |
author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
YOHANNA EVELYN MIOTTO, UFRGS; CAROLINA TESSELE, UFRGS; ANA BEATRIZ COSTA CZERMAINSKI, CNPUV; DIOGO DENARDI PORTO, CPATSA; VÍTOR DA SILVEIRA FALAVIGNA, UFRGS; TIAGO SARTOR, UFRGS; AMANDA MALVESSI CATTANI, UFRGS; CARLA ANDREA DELATORRE, UFRGS; SÉRGIO AMORIM DE ALENCAR, UCB; ORZENIL BONFIM DA SILVA JUNIOR, Cenargen; ROBERTO COITI TOGAWA, Cenargen; MARCOS MOTA DO CARMO COSTA, Cenargen; GEORGIOS JOANNIS PAPPAS JÚNIOR, UNB; PRISCILA GRYNBERG, Cenargen; PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; MARCUS VINÍCIUS KVITSCHAL, EPAGRI; FREDERICO DENARDI, EPAGRI; VANESSA BUFFON, CNPUV; LUÍS FERNANDO REVERS, UFRGS. |
dc.contributor.author.fl_str_mv |
MIOTTO, Y. E. TESSELE, C. CZERMAINSKI, A. B. C. PORTO, D. D. FALAVIGNA, V. da S. SARTOR, T. CATTANI, A. M. DELATORRE, C. A. ALENCAR, S. A. de SILVA JUNIOR, O. B. da TOGAWA, R. C. COSTA, M. M. do C. PAPPAS JÚNIOR, G. J. GRYNBERG, P. OLIVEIRA, P. R. D. de KVITSCHAL, M. V. DENARDI, F. BUFFON, V. REVERS, L. F. |
dc.subject.por.fl_str_mv |
Bud dormancy Linkage mapping MdoFLC MdoICE1 MdoPRE1 Apples Chilling requirement |
topic |
Bud dormancy Linkage mapping MdoFLC MdoICE1 MdoPRE1 Apples Chilling requirement |
description |
Chilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-06-12T00:39:12Z 2019-06-12T00:39:12Z 2019-06-11 2019 2020-01-06T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Frontiers in Plant Science, v. 10, article 33, 2019. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109789 10.3389/fpls.2019.00033 |
identifier_str_mv |
Frontiers in Plant Science, v. 10, article 33, 2019. 10.3389/fpls.2019.00033 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1109789 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503476062978048 |