Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125193 |
Resumo: | The molecular characterization of ten genotypes of the Coffea arabica plants and of seven genotypes of C. canephora having interesting features for coffee breeding programs was carried to select the parents for breeding. A total of 40 SSR and 29 ISSR primers were used. The primers generated a total of 331 (307 polymorphic and 24 monomorphic) bands. Analysis of genetic diversity presented dissimilarity intervals ranging from 0.22 to 0.44 between the Conilon genotypes, from 0.02 to 0.28 between the Arabica genotypes, and from 0.49 to 0.60 between the genotypes of the two species in the joint analysis. Four groups were formed: I = genotypes of C. arabica, II = four progenies of C. canephora, Conilon group, and one non defined C. canephora (Conilon or Robusta), III = one progeny of un-defined C. canephora (Conilon or Robusta) and IV = one progeny of C. canephora of Robusta group. The grouping formed was consistent with the origins of each group. High stabilities of the bifurcations were found by bootstrap analysis. The use of molecular markers of the SSR and ISSR types in the diversity study was efficient in distinguishing genotypes between and within C. arabica and C. canephora. |
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Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers.Coffea ArábicaCoffea CanephoraThe molecular characterization of ten genotypes of the Coffea arabica plants and of seven genotypes of C. canephora having interesting features for coffee breeding programs was carried to select the parents for breeding. A total of 40 SSR and 29 ISSR primers were used. The primers generated a total of 331 (307 polymorphic and 24 monomorphic) bands. Analysis of genetic diversity presented dissimilarity intervals ranging from 0.22 to 0.44 between the Conilon genotypes, from 0.02 to 0.28 between the Arabica genotypes, and from 0.49 to 0.60 between the genotypes of the two species in the joint analysis. Four groups were formed: I = genotypes of C. arabica, II = four progenies of C. canephora, Conilon group, and one non defined C. canephora (Conilon or Robusta), III = one progeny of un-defined C. canephora (Conilon or Robusta) and IV = one progeny of C. canephora of Robusta group. The grouping formed was consistent with the origins of each group. High stabilities of the bifurcations were found by bootstrap analysis. The use of molecular markers of the SSR and ISSR types in the diversity study was efficient in distinguishing genotypes between and within C. arabica and C. canephora.Ludymila Brandão Motta, Universidade Federal do Espírito Santo; Taís Cristina Bastos Soares, Universidade Federal do Espírito Santo; MARIA AMELIA GAVA FERRAO, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Rodrigo Monte Lorenzon, Universidade Federal do Espírito Santo; José Dias de Souza Neto, Universidade Federal do Espírito Santo.MOTTA, L. B.SOARES, T. C. B.FERRAO, M. A. G.CAIXETA, E. T.LORENZON, R. M.SOUZA NETO, J. D. de2020-10-01T09:12:22Z2020-10-01T09:12:22Z2020-09-302014info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBrazilian Archives of biology and technology, v. 57 , n. 5, p.728-735 , 2014.http://www.alice.cnptia.embrapa.br/alice/handle/doc/112519310.1590/S1516-8913201402071enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-10-01T09:12:28Zoai:www.alice.cnptia.embrapa.br:doc/1125193Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-10-01T09:12:28falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-10-01T09:12:28Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
title |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
spellingShingle |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. MOTTA, L. B. Coffea Arábica Coffea Canephora |
title_short |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
title_full |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
title_fullStr |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
title_full_unstemmed |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
title_sort |
Molecular characterization of arabica and conilon coffee plants genotypes by SSR and ISSR markers. |
author |
MOTTA, L. B. |
author_facet |
MOTTA, L. B. SOARES, T. C. B. FERRAO, M. A. G. CAIXETA, E. T. LORENZON, R. M. SOUZA NETO, J. D. de |
author_role |
author |
author2 |
SOARES, T. C. B. FERRAO, M. A. G. CAIXETA, E. T. LORENZON, R. M. SOUZA NETO, J. D. de |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Ludymila Brandão Motta, Universidade Federal do Espírito Santo; Taís Cristina Bastos Soares, Universidade Federal do Espírito Santo; MARIA AMELIA GAVA FERRAO, CNPCa; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Rodrigo Monte Lorenzon, Universidade Federal do Espírito Santo; José Dias de Souza Neto, Universidade Federal do Espírito Santo. |
dc.contributor.author.fl_str_mv |
MOTTA, L. B. SOARES, T. C. B. FERRAO, M. A. G. CAIXETA, E. T. LORENZON, R. M. SOUZA NETO, J. D. de |
dc.subject.por.fl_str_mv |
Coffea Arábica Coffea Canephora |
topic |
Coffea Arábica Coffea Canephora |
description |
The molecular characterization of ten genotypes of the Coffea arabica plants and of seven genotypes of C. canephora having interesting features for coffee breeding programs was carried to select the parents for breeding. A total of 40 SSR and 29 ISSR primers were used. The primers generated a total of 331 (307 polymorphic and 24 monomorphic) bands. Analysis of genetic diversity presented dissimilarity intervals ranging from 0.22 to 0.44 between the Conilon genotypes, from 0.02 to 0.28 between the Arabica genotypes, and from 0.49 to 0.60 between the genotypes of the two species in the joint analysis. Four groups were formed: I = genotypes of C. arabica, II = four progenies of C. canephora, Conilon group, and one non defined C. canephora (Conilon or Robusta), III = one progeny of un-defined C. canephora (Conilon or Robusta) and IV = one progeny of C. canephora of Robusta group. The grouping formed was consistent with the origins of each group. High stabilities of the bifurcations were found by bootstrap analysis. The use of molecular markers of the SSR and ISSR types in the diversity study was efficient in distinguishing genotypes between and within C. arabica and C. canephora. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014 2020-10-01T09:12:22Z 2020-10-01T09:12:22Z 2020-09-30 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Brazilian Archives of biology and technology, v. 57 , n. 5, p.728-735 , 2014. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125193 10.1590/S1516-8913201402071 |
identifier_str_mv |
Brazilian Archives of biology and technology, v. 57 , n. 5, p.728-735 , 2014. 10.1590/S1516-8913201402071 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125193 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503495945027584 |