Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna.
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/911321 https://doi.org/10.3732/ajb.1100135 |
Resumo: | ? Premise of the study: We developed a new set of microsatellite markers for studying the genome of the janaguba tree, Himatanthus drasticus (Mart.) Plumel, which is used in folk medicine in northeastern Brazil. These novel markers are being used to evaluate the effect of harvesting on the genetic structure and diversity of natural populations of this species. ? Methods and Results: Microsatellite loci were isolated from an enriched H. drasticus genomic library. Nine primer pairs successfully amplified polymorphic microsatellite regions, with an average of 8.5 alleles per locus. The average values of observed and expected heterozygosity were 0.456 and 0.601, respectively. ? Conclusions: The microsatellite markers described here are valuable tools for population genetics studies of H. drasticus. The majority of the primers also amplified sequences in the genome of another species of the same genus. This new set of markers may be useful in designing a genetic conservation strategy and a sustainable management plan for the species. |
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Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna.ConservationMolecular markersSustainable managementharvestingmedicinal plants? Premise of the study: We developed a new set of microsatellite markers for studying the genome of the janaguba tree, Himatanthus drasticus (Mart.) Plumel, which is used in folk medicine in northeastern Brazil. These novel markers are being used to evaluate the effect of harvesting on the genetic structure and diversity of natural populations of this species. ? Methods and Results: Microsatellite loci were isolated from an enriched H. drasticus genomic library. Nine primer pairs successfully amplified polymorphic microsatellite regions, with an average of 8.5 alleles per locus. The average values of observed and expected heterozygosity were 0.456 and 0.601, respectively. ? Conclusions: The microsatellite markers described here are valuable tools for population genetics studies of H. drasticus. The majority of the primers also amplified sequences in the genome of another species of the same genus. This new set of markers may be useful in designing a genetic conservation strategy and a sustainable management plan for the species.CRISTNA BALDAUF, UNICAMP/CAMPINAS; MAÍSA B. CIAMPI, ESALQ/PIRACICABA; BIANCA BACCILI ZANOTTO VIGNA, CPPSE; GUSTAVO M. MORI, UNICAMP/CAMPINAS; JULIAN P. P. GUEDES, PUC/CAMPINAS; ANETE P. DE SOUZA, UNICAMP/CAMPINAS; FALVIO A. M. DOS SANTOS, UNICAMP/CAMPINAS.BALDAUF, C.CIAMPI, M. B.VIGNA, B. B. Z.MORI, G. M.GUEDES, J. P. P.SOUZA, A. P. deSANTOS, F. A. M. dos2022-07-19T20:19:36Z2022-07-19T20:19:36Z2012-01-022011info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAmerican Journal of botany, v. 98, n. 9, p. 244-246, Sep. 2011.http://www.alice.cnptia.embrapa.br/alice/handle/doc/911321https://doi.org/10.3732/ajb.1100135enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2022-07-19T20:19:44Zoai:www.alice.cnptia.embrapa.br:doc/911321Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542022-07-19T20:19:44falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542022-07-19T20:19:44Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
title |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
spellingShingle |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. BALDAUF, C. Conservation Molecular markers Sustainable management harvesting medicinal plants |
title_short |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
title_full |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
title_fullStr |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
title_full_unstemmed |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
title_sort |
Characterization of microsatellite loci in Himatanthus drasticus (Apocynaceae), a medicinal plant from the Brazilian savanna. |
author |
BALDAUF, C. |
author_facet |
BALDAUF, C. CIAMPI, M. B. VIGNA, B. B. Z. MORI, G. M. GUEDES, J. P. P. SOUZA, A. P. de SANTOS, F. A. M. dos |
author_role |
author |
author2 |
CIAMPI, M. B. VIGNA, B. B. Z. MORI, G. M. GUEDES, J. P. P. SOUZA, A. P. de SANTOS, F. A. M. dos |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
CRISTNA BALDAUF, UNICAMP/CAMPINAS; MAÍSA B. CIAMPI, ESALQ/PIRACICABA; BIANCA BACCILI ZANOTTO VIGNA, CPPSE; GUSTAVO M. MORI, UNICAMP/CAMPINAS; JULIAN P. P. GUEDES, PUC/CAMPINAS; ANETE P. DE SOUZA, UNICAMP/CAMPINAS; FALVIO A. M. DOS SANTOS, UNICAMP/CAMPINAS. |
dc.contributor.author.fl_str_mv |
BALDAUF, C. CIAMPI, M. B. VIGNA, B. B. Z. MORI, G. M. GUEDES, J. P. P. SOUZA, A. P. de SANTOS, F. A. M. dos |
dc.subject.por.fl_str_mv |
Conservation Molecular markers Sustainable management harvesting medicinal plants |
topic |
Conservation Molecular markers Sustainable management harvesting medicinal plants |
description |
? Premise of the study: We developed a new set of microsatellite markers for studying the genome of the janaguba tree, Himatanthus drasticus (Mart.) Plumel, which is used in folk medicine in northeastern Brazil. These novel markers are being used to evaluate the effect of harvesting on the genetic structure and diversity of natural populations of this species. ? Methods and Results: Microsatellite loci were isolated from an enriched H. drasticus genomic library. Nine primer pairs successfully amplified polymorphic microsatellite regions, with an average of 8.5 alleles per locus. The average values of observed and expected heterozygosity were 0.456 and 0.601, respectively. ? Conclusions: The microsatellite markers described here are valuable tools for population genetics studies of H. drasticus. The majority of the primers also amplified sequences in the genome of another species of the same genus. This new set of markers may be useful in designing a genetic conservation strategy and a sustainable management plan for the species. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011 2012-01-02 2022-07-19T20:19:36Z 2022-07-19T20:19:36Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
American Journal of botany, v. 98, n. 9, p. 244-246, Sep. 2011. http://www.alice.cnptia.embrapa.br/alice/handle/doc/911321 https://doi.org/10.3732/ajb.1100135 |
identifier_str_mv |
American Journal of botany, v. 98, n. 9, p. 244-246, Sep. 2011. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/911321 https://doi.org/10.3732/ajb.1100135 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503526221611008 |