Cross-amplification of heterologous microsatellite markers in Piracanjuba

Detalhes bibliográficos
Autor(a) principal: Castro,Pedro Luiz de
Data de Publicação: 2017
Outros Autores: Ribeiro,Ricardo Pereira, Santos,Silvio Carlos Alves dos, Goes,Elenice Souza dos Reis, Souza,Felipe Pinheiro de, Poveda-Parra,Angela Rocio, Vargas,Lauro, Urrea-Rojas,Angela Maria, Lopera-Barrero,Nelson Mauricio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Ciência Rural
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782017001200402
Resumo: ABSTRACT: Brycon orbignyanus, popularly known in Brazil as piracanjuba, is a fish with great economic value but whose natural population drastically decreased in number during the last years. In this context, genetic variability studies of natural stocks and in restocking programs are fundamental for the adoption of conservation measures. Current analysis verifies the cross-amplification of heterologous primers in B. orbignyanus. Fifty-two primers of the species Brycon opalinus, Brycon hilarii, Brycon insignis, Prochilodus sp., Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus were tested. Primers with the best reproducibility were applied to a sample of 20 individuals and the genetic parameters were calculated. Nine primers provided good results for cross-amplification with B. orbignyanus, involving (BoM5 and BoM13) of Brycon opalinus, (Bh5, Bh6, Bh8, Bh13 and Bh16) of Brycon hilarii, (Bc48-10) of Brycon insignis and (Par80) of Prochilodus argenteus. Primers of Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus failed to provide amplification or provided non-specificity. Results demonstrated the possibility of using primers of different species and genera of B. orbignyanus, facilitating genetic studies on the species.
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spelling Cross-amplification of heterologous microsatellite markers in PiracanjubaBrycon orbignyanusconservationmolecular markersheterologous primersABSTRACT: Brycon orbignyanus, popularly known in Brazil as piracanjuba, is a fish with great economic value but whose natural population drastically decreased in number during the last years. In this context, genetic variability studies of natural stocks and in restocking programs are fundamental for the adoption of conservation measures. Current analysis verifies the cross-amplification of heterologous primers in B. orbignyanus. Fifty-two primers of the species Brycon opalinus, Brycon hilarii, Brycon insignis, Prochilodus sp., Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus were tested. Primers with the best reproducibility were applied to a sample of 20 individuals and the genetic parameters were calculated. Nine primers provided good results for cross-amplification with B. orbignyanus, involving (BoM5 and BoM13) of Brycon opalinus, (Bh5, Bh6, Bh8, Bh13 and Bh16) of Brycon hilarii, (Bc48-10) of Brycon insignis and (Par80) of Prochilodus argenteus. Primers of Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus failed to provide amplification or provided non-specificity. Results demonstrated the possibility of using primers of different species and genera of B. orbignyanus, facilitating genetic studies on the species.Universidade Federal de Santa Maria2017-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782017001200402Ciência Rural v.47 n.12 2017reponame:Ciência Ruralinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM10.1590/0103-8478cr20170374info:eu-repo/semantics/openAccessCastro,Pedro Luiz deRibeiro,Ricardo PereiraSantos,Silvio Carlos Alves dosGoes,Elenice Souza dos ReisSouza,Felipe Pinheiro dePoveda-Parra,Angela RocioVargas,LauroUrrea-Rojas,Angela MariaLopera-Barrero,Nelson Mauricioeng2017-11-28T00:00:00ZRevista
dc.title.none.fl_str_mv Cross-amplification of heterologous microsatellite markers in Piracanjuba
title Cross-amplification of heterologous microsatellite markers in Piracanjuba
spellingShingle Cross-amplification of heterologous microsatellite markers in Piracanjuba
Castro,Pedro Luiz de
Brycon orbignyanus
conservation
molecular markers
heterologous primers
title_short Cross-amplification of heterologous microsatellite markers in Piracanjuba
title_full Cross-amplification of heterologous microsatellite markers in Piracanjuba
title_fullStr Cross-amplification of heterologous microsatellite markers in Piracanjuba
title_full_unstemmed Cross-amplification of heterologous microsatellite markers in Piracanjuba
title_sort Cross-amplification of heterologous microsatellite markers in Piracanjuba
author Castro,Pedro Luiz de
author_facet Castro,Pedro Luiz de
Ribeiro,Ricardo Pereira
Santos,Silvio Carlos Alves dos
Goes,Elenice Souza dos Reis
Souza,Felipe Pinheiro de
Poveda-Parra,Angela Rocio
Vargas,Lauro
Urrea-Rojas,Angela Maria
Lopera-Barrero,Nelson Mauricio
author_role author
author2 Ribeiro,Ricardo Pereira
Santos,Silvio Carlos Alves dos
Goes,Elenice Souza dos Reis
Souza,Felipe Pinheiro de
Poveda-Parra,Angela Rocio
Vargas,Lauro
Urrea-Rojas,Angela Maria
Lopera-Barrero,Nelson Mauricio
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Castro,Pedro Luiz de
Ribeiro,Ricardo Pereira
Santos,Silvio Carlos Alves dos
Goes,Elenice Souza dos Reis
Souza,Felipe Pinheiro de
Poveda-Parra,Angela Rocio
Vargas,Lauro
Urrea-Rojas,Angela Maria
Lopera-Barrero,Nelson Mauricio
dc.subject.por.fl_str_mv Brycon orbignyanus
conservation
molecular markers
heterologous primers
topic Brycon orbignyanus
conservation
molecular markers
heterologous primers
description ABSTRACT: Brycon orbignyanus, popularly known in Brazil as piracanjuba, is a fish with great economic value but whose natural population drastically decreased in number during the last years. In this context, genetic variability studies of natural stocks and in restocking programs are fundamental for the adoption of conservation measures. Current analysis verifies the cross-amplification of heterologous primers in B. orbignyanus. Fifty-two primers of the species Brycon opalinus, Brycon hilarii, Brycon insignis, Prochilodus sp., Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus were tested. Primers with the best reproducibility were applied to a sample of 20 individuals and the genetic parameters were calculated. Nine primers provided good results for cross-amplification with B. orbignyanus, involving (BoM5 and BoM13) of Brycon opalinus, (Bh5, Bh6, Bh8, Bh13 and Bh16) of Brycon hilarii, (Bc48-10) of Brycon insignis and (Par80) of Prochilodus argenteus. Primers of Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus failed to provide amplification or provided non-specificity. Results demonstrated the possibility of using primers of different species and genera of B. orbignyanus, facilitating genetic studies on the species.
publishDate 2017
dc.date.none.fl_str_mv 2017-12-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782017001200402
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782017001200402
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/0103-8478cr20170374
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
publisher.none.fl_str_mv Universidade Federal de Santa Maria
dc.source.none.fl_str_mv Ciência Rural v.47 n.12 2017
reponame:Ciência Rural
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Ciência Rural
collection Ciência Rural
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repository.mail.fl_str_mv
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