13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1143402 |
Resumo: | Kafirins, water-insoluble proteins from Sweet Sorghum BR501 grains, have been an alternative to prepare edible coatings for food due to their hydrophobic character. In this work, the secondary structures (SS) content of reduced (SSr) and unreduced (SSu) kafirins were determined by 13C solid-state-NMR spectroscopy using areas of carbonyl peak. The SS elucidate by fitting the signal with the Lorentzian function shows 56% and 59% of α-helix and 40% and 12% of β-sheet structures for SSr and SSu, respectively. The SS also were elucidated by a Singular value decomposition- SVD method shows 55% and 49% of α-helix and 12% and 8% of β-sheet structure for SSr and SSu, respectively. Since SVD does not depend on the operator and has higher correlation coefficients for α-helix (0.96%) and β-sheet (0.91%), it is a reliable method to quantify the SS of insoluble proteins using the 13C NMR signal. |
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13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.KafirinSecondary structures proteins13C NMR spectroscopyKafirins, water-insoluble proteins from Sweet Sorghum BR501 grains, have been an alternative to prepare edible coatings for food due to their hydrophobic character. In this work, the secondary structures (SS) content of reduced (SSr) and unreduced (SSu) kafirins were determined by 13C solid-state-NMR spectroscopy using areas of carbonyl peak. The SS elucidate by fitting the signal with the Lorentzian function shows 56% and 59% of α-helix and 40% and 12% of β-sheet structures for SSr and SSu, respectively. The SS also were elucidated by a Singular value decomposition- SVD method shows 55% and 49% of α-helix and 12% and 8% of β-sheet structure for SSr and SSu, respectively. Since SVD does not depend on the operator and has higher correlation coefficients for α-helix (0.96%) and β-sheet (0.91%), it is a reliable method to quantify the SS of insoluble proteins using the 13C NMR signal.RUBENS BERNARDES FILHO, CNPDIA; LUIZ ALBERTO COLNAGO, CNPDIA; LUCIMARA APARECIDA FORATO, CNPDIA.RIBEIRO, T. S.SCRAMIN, J. A.RODRIGUES, J. A. S.BERNARDES FILHO, R.COLNAGO, L. A.FORATO, L. A.2024-01-24T11:27:00Z2024-01-24T11:27:00Z2022-05-242022info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article6 p.Polímeros, v. 32, n. 1, e2022009, 2022.1678-5169http://www.alice.cnptia.embrapa.br/alice/handle/doc/114340210.1590/0104-1428.20210082enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2024-01-24T11:27:00Zoai:www.alice.cnptia.embrapa.br:doc/1143402Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542024-01-24T11:27falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542024-01-24T11:27Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
title |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
spellingShingle |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. RIBEIRO, T. S. Kafirin Secondary structures proteins 13C NMR spectroscopy |
title_short |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
title_full |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
title_fullStr |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
title_full_unstemmed |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
title_sort |
13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation. |
author |
RIBEIRO, T. S. |
author_facet |
RIBEIRO, T. S. SCRAMIN, J. A. RODRIGUES, J. A. S. BERNARDES FILHO, R. COLNAGO, L. A. FORATO, L. A. |
author_role |
author |
author2 |
SCRAMIN, J. A. RODRIGUES, J. A. S. BERNARDES FILHO, R. COLNAGO, L. A. FORATO, L. A. |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
RUBENS BERNARDES FILHO, CNPDIA; LUIZ ALBERTO COLNAGO, CNPDIA; LUCIMARA APARECIDA FORATO, CNPDIA. |
dc.contributor.author.fl_str_mv |
RIBEIRO, T. S. SCRAMIN, J. A. RODRIGUES, J. A. S. BERNARDES FILHO, R. COLNAGO, L. A. FORATO, L. A. |
dc.subject.por.fl_str_mv |
Kafirin Secondary structures proteins 13C NMR spectroscopy |
topic |
Kafirin Secondary structures proteins 13C NMR spectroscopy |
description |
Kafirins, water-insoluble proteins from Sweet Sorghum BR501 grains, have been an alternative to prepare edible coatings for food due to their hydrophobic character. In this work, the secondary structures (SS) content of reduced (SSr) and unreduced (SSu) kafirins were determined by 13C solid-state-NMR spectroscopy using areas of carbonyl peak. The SS elucidate by fitting the signal with the Lorentzian function shows 56% and 59% of α-helix and 40% and 12% of β-sheet structures for SSr and SSu, respectively. The SS also were elucidated by a Singular value decomposition- SVD method shows 55% and 49% of α-helix and 12% and 8% of β-sheet structure for SSr and SSu, respectively. Since SVD does not depend on the operator and has higher correlation coefficients for α-helix (0.96%) and β-sheet (0.91%), it is a reliable method to quantify the SS of insoluble proteins using the 13C NMR signal. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-05-24 2022 2024-01-24T11:27:00Z 2024-01-24T11:27:00Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Polímeros, v. 32, n. 1, e2022009, 2022. 1678-5169 http://www.alice.cnptia.embrapa.br/alice/handle/doc/1143402 10.1590/0104-1428.20210082 |
identifier_str_mv |
Polímeros, v. 32, n. 1, e2022009, 2022. 1678-5169 10.1590/0104-1428.20210082 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1143402 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
6 p. |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503556190961664 |