13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.

Detalhes bibliográficos
Autor(a) principal: RIBEIRO, T. S.
Data de Publicação: 2022
Outros Autores: SCRAMIN, J. A., RODRIGUES, J. A. S., BERNARDES FILHO, R., COLNAGO, L. A., FORATO, L. A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1143402
Resumo: Kafirins, water-insoluble proteins from Sweet Sorghum BR501 grains, have been an alternative to prepare edible coatings for food due to their hydrophobic character. In this work, the secondary structures (SS) content of reduced (SSr) and unreduced (SSu) kafirins were determined by 13C solid-state-NMR spectroscopy using areas of carbonyl peak. The SS elucidate by fitting the signal with the Lorentzian function shows 56% and 59% of α-helix and 40% and 12% of β-sheet structures for SSr and SSu, respectively. The SS also were elucidated by a Singular value decomposition- SVD method shows 55% and 49% of α-helix and 12% and 8% of β-sheet structure for SSr and SSu, respectively. Since SVD does not depend on the operator and has higher correlation coefficients for α-helix (0.96%) and β-sheet (0.91%), it is a reliable method to quantify the SS of insoluble proteins using the 13C NMR signal.
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spelling 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.KafirinSecondary structures proteins13C NMR spectroscopyKafirins, water-insoluble proteins from Sweet Sorghum BR501 grains, have been an alternative to prepare edible coatings for food due to their hydrophobic character. In this work, the secondary structures (SS) content of reduced (SSr) and unreduced (SSu) kafirins were determined by 13C solid-state-NMR spectroscopy using areas of carbonyl peak. The SS elucidate by fitting the signal with the Lorentzian function shows 56% and 59% of α-helix and 40% and 12% of β-sheet structures for SSr and SSu, respectively. The SS also were elucidated by a Singular value decomposition- SVD method shows 55% and 49% of α-helix and 12% and 8% of β-sheet structure for SSr and SSu, respectively. Since SVD does not depend on the operator and has higher correlation coefficients for α-helix (0.96%) and β-sheet (0.91%), it is a reliable method to quantify the SS of insoluble proteins using the 13C NMR signal.RUBENS BERNARDES FILHO, CNPDIA; LUIZ ALBERTO COLNAGO, CNPDIA; LUCIMARA APARECIDA FORATO, CNPDIA.RIBEIRO, T. S.SCRAMIN, J. A.RODRIGUES, J. A. S.BERNARDES FILHO, R.COLNAGO, L. A.FORATO, L. A.2024-01-24T11:27:00Z2024-01-24T11:27:00Z2022-05-242022info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article6 p.Polímeros, v. 32, n. 1, e2022009, 2022.1678-5169http://www.alice.cnptia.embrapa.br/alice/handle/doc/114340210.1590/0104-1428.20210082enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2024-01-24T11:27:00Zoai:www.alice.cnptia.embrapa.br:doc/1143402Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542024-01-24T11:27falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542024-01-24T11:27Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
title 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
spellingShingle 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
RIBEIRO, T. S.
Kafirin
Secondary structures proteins
13C NMR spectroscopy
title_short 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
title_full 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
title_fullStr 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
title_full_unstemmed 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
title_sort 13C ss-NMR Singular value decomposition and fitting for sorghum proteins conformation elucidation.
author RIBEIRO, T. S.
author_facet RIBEIRO, T. S.
SCRAMIN, J. A.
RODRIGUES, J. A. S.
BERNARDES FILHO, R.
COLNAGO, L. A.
FORATO, L. A.
author_role author
author2 SCRAMIN, J. A.
RODRIGUES, J. A. S.
BERNARDES FILHO, R.
COLNAGO, L. A.
FORATO, L. A.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv RUBENS BERNARDES FILHO, CNPDIA; LUIZ ALBERTO COLNAGO, CNPDIA; LUCIMARA APARECIDA FORATO, CNPDIA.
dc.contributor.author.fl_str_mv RIBEIRO, T. S.
SCRAMIN, J. A.
RODRIGUES, J. A. S.
BERNARDES FILHO, R.
COLNAGO, L. A.
FORATO, L. A.
dc.subject.por.fl_str_mv Kafirin
Secondary structures proteins
13C NMR spectroscopy
topic Kafirin
Secondary structures proteins
13C NMR spectroscopy
description Kafirins, water-insoluble proteins from Sweet Sorghum BR501 grains, have been an alternative to prepare edible coatings for food due to their hydrophobic character. In this work, the secondary structures (SS) content of reduced (SSr) and unreduced (SSu) kafirins were determined by 13C solid-state-NMR spectroscopy using areas of carbonyl peak. The SS elucidate by fitting the signal with the Lorentzian function shows 56% and 59% of α-helix and 40% and 12% of β-sheet structures for SSr and SSu, respectively. The SS also were elucidated by a Singular value decomposition- SVD method shows 55% and 49% of α-helix and 12% and 8% of β-sheet structure for SSr and SSu, respectively. Since SVD does not depend on the operator and has higher correlation coefficients for α-helix (0.96%) and β-sheet (0.91%), it is a reliable method to quantify the SS of insoluble proteins using the 13C NMR signal.
publishDate 2022
dc.date.none.fl_str_mv 2022-05-24
2022
2024-01-24T11:27:00Z
2024-01-24T11:27:00Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Polímeros, v. 32, n. 1, e2022009, 2022.
1678-5169
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1143402
10.1590/0104-1428.20210082
identifier_str_mv Polímeros, v. 32, n. 1, e2022009, 2022.
1678-5169
10.1590/0104-1428.20210082
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1143402
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 6 p.
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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