Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.

Detalhes bibliográficos
Autor(a) principal: BRAGA, L. P.
Data de Publicação: 2023
Outros Autores: TANENTZAP, A. J., LEE, B., TSAI, S. M., RAAIJMAKERS, J. M., MENDES, R., MENDES, L. W.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1156276
Resumo: Abstract: The rhizosphere microbiome plays a key role in plant protection against soil-borne pathogens. Plant breeding for resistance against soil-borne pathogens can alter the rhizosphere microbiome. However, most studies have focused on bacterial and fungal communities, leaving the role of the virus and viroids unassessed. Here, we tested the influence of resistance breeding on the composition of rhizosphere viruses and viroids. By analyzing metatranscriptomes from the rhizosphere of common bean (Phaseolus vulgaris) cultivars with varying resistance to the soil-borne pathogen Fusarium oxysporum, we recovered sequences representing 78 and 23 novel populations of viruses and viroids, respectively. We compared the abundances of these infectious agents across the different cultivars and found that the Fusarium-resistant cultivar harbored >1.2 times more viroids and a more different composition of viroids and viruses than less resistant plants. Given their role in interfering with host metabolism and their potential influence on plant-fungi associations, our study suggests that changes in the rhizosphere infectome are an important consideration in breeding for resistance against soil-borne pathogens.
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spelling Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.Plant-microbe interactionsInfectomeRizosferaFeijãoDoença de PlantaResistênciaVírusSoil-plant interactionsMicrobiomeVirusesBeansFood securityAbstract: The rhizosphere microbiome plays a key role in plant protection against soil-borne pathogens. Plant breeding for resistance against soil-borne pathogens can alter the rhizosphere microbiome. However, most studies have focused on bacterial and fungal communities, leaving the role of the virus and viroids unassessed. Here, we tested the influence of resistance breeding on the composition of rhizosphere viruses and viroids. By analyzing metatranscriptomes from the rhizosphere of common bean (Phaseolus vulgaris) cultivars with varying resistance to the soil-borne pathogen Fusarium oxysporum, we recovered sequences representing 78 and 23 novel populations of viruses and viroids, respectively. We compared the abundances of these infectious agents across the different cultivars and found that the Fusarium-resistant cultivar harbored >1.2 times more viroids and a more different composition of viroids and viruses than less resistant plants. Given their role in interfering with host metabolism and their potential influence on plant-fungi associations, our study suggests that changes in the rhizosphere infectome are an important consideration in breeding for resistance against soil-borne pathogens.LUCAS P.P. BRAGA, UNIVERSITY OF CAMBRIDGE; ANDREW J. TANENTZAP, UNIVERSITY OF CAMBRIDGE; BENJAMIN LEE, NATIONAL INSTITUTES OF HEALTH; SIU MUI TSAI, UNIVERSIDADE DE SÃO PAULO; JOS M. RAAIJMAKERS, NETHERLANDS INSTITUTE OF ECOLOGY; RODRIGO MENDES, CNPMA; LUCAS WILLIAM MENDES, UNIVERSIDADE DE SÃO PAULO.BRAGA, L. P.TANENTZAP, A. J.LEE, B.TSAI, S. M.RAAIJMAKERS, J. M.MENDES, R.MENDES, L. W.2023-08-31T20:24:00Z2023-08-31T20:24:00Z2023-08-312023info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleApplied Soil Ecology, v. 190, article 105018, 2023.0929-1393http://www.alice.cnptia.embrapa.br/alice/handle/doc/115627610.1016/j.apsoil.2023.105018enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2023-08-31T20:24:00Zoai:www.alice.cnptia.embrapa.br:doc/1156276Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542023-08-31T20:24Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
spellingShingle Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
BRAGA, L. P.
Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
title_short Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_full Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_fullStr Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_full_unstemmed Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_sort Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
author BRAGA, L. P.
author_facet BRAGA, L. P.
TANENTZAP, A. J.
LEE, B.
TSAI, S. M.
RAAIJMAKERS, J. M.
MENDES, R.
MENDES, L. W.
author_role author
author2 TANENTZAP, A. J.
LEE, B.
TSAI, S. M.
RAAIJMAKERS, J. M.
MENDES, R.
MENDES, L. W.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv LUCAS P.P. BRAGA, UNIVERSITY OF CAMBRIDGE; ANDREW J. TANENTZAP, UNIVERSITY OF CAMBRIDGE; BENJAMIN LEE, NATIONAL INSTITUTES OF HEALTH; SIU MUI TSAI, UNIVERSIDADE DE SÃO PAULO; JOS M. RAAIJMAKERS, NETHERLANDS INSTITUTE OF ECOLOGY; RODRIGO MENDES, CNPMA; LUCAS WILLIAM MENDES, UNIVERSIDADE DE SÃO PAULO.
dc.contributor.author.fl_str_mv BRAGA, L. P.
TANENTZAP, A. J.
LEE, B.
TSAI, S. M.
RAAIJMAKERS, J. M.
MENDES, R.
MENDES, L. W.
dc.subject.por.fl_str_mv Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
topic Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
description Abstract: The rhizosphere microbiome plays a key role in plant protection against soil-borne pathogens. Plant breeding for resistance against soil-borne pathogens can alter the rhizosphere microbiome. However, most studies have focused on bacterial and fungal communities, leaving the role of the virus and viroids unassessed. Here, we tested the influence of resistance breeding on the composition of rhizosphere viruses and viroids. By analyzing metatranscriptomes from the rhizosphere of common bean (Phaseolus vulgaris) cultivars with varying resistance to the soil-borne pathogen Fusarium oxysporum, we recovered sequences representing 78 and 23 novel populations of viruses and viroids, respectively. We compared the abundances of these infectious agents across the different cultivars and found that the Fusarium-resistant cultivar harbored >1.2 times more viroids and a more different composition of viroids and viruses than less resistant plants. Given their role in interfering with host metabolism and their potential influence on plant-fungi associations, our study suggests that changes in the rhizosphere infectome are an important consideration in breeding for resistance against soil-borne pathogens.
publishDate 2023
dc.date.none.fl_str_mv 2023-08-31T20:24:00Z
2023-08-31T20:24:00Z
2023-08-31
2023
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Applied Soil Ecology, v. 190, article 105018, 2023.
0929-1393
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1156276
10.1016/j.apsoil.2023.105018
identifier_str_mv Applied Soil Ecology, v. 190, article 105018, 2023.
0929-1393
10.1016/j.apsoil.2023.105018
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1156276
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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