Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation

Detalhes bibliográficos
Autor(a) principal: Oliveira, Thays Duarte de
Data de Publicação: 2017
Outros Autores: Kretschmer, Rafael, Bertocchi, Natasha Avila, Degrandi, Tiago Marafiga, Oliveira, Edivaldo Herculano Correa de, Cioffi, Marcelo de Bello, Garnero, Analía del Valle, Gunski, Ricardo José
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: https://patua.iec.gov.br/handle/iec/2524
Resumo: Birds are characterized by a low proportion of repetitive DNA in their genome when compared to other vertebrates. Among birds, species belonging to Piciformes order, such as woodpeckers, show a relatively higher amount of these sequences. The aim of this study was to analyze the distribution of different classes of repetitive DNAÐincluding microsatellites, telomere sequences and 18S rDNAÐin the karyotype of three Picidae species (Aves, Piciformes)ÐColaptes melanochloros (2n = 84), Colaptes campestris (2n = 84) and Melanerpes candidus (2n = 64)±by means of fluorescence in situ hybridization. Clusters of 18S rDNA were found in one microchromosome pair in each of the three species, coinciding to a region of (CGG)10 sequence accumulation. Interstitial telomeric sequences were found in some macrochromosomes pairs, indicating possible regions of fusions, which can be related to variation of diploid number in the family. Only one, from the 11 different microsatellite sequences used, did not produce any signals. Both species of genus Colaptes showed a similar distribution of microsatellite sequences, with some difference when compared to M. candidus. Microsatellites were found preferentially in the centromeric and telomeric regions of micro and macrochromosomes. However, some sequences produced patterns of interstitial bands in the Z chromosome, which corresponds to the largest element of the karyotype in all three species. This was not observed in theWchromosome of Colaptes melanochloros, which is heterochromatic in most of its length, but was not hybridized by any of the sequences used. These results highlight the importance of microsatellite sequences in differentiation of sex chromosomes, and the accumulation of these sequences is probably responsible for the enlargement of the Z chromosome.
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spelling Oliveira, Thays Duarte deKretschmer, RafaelBertocchi, Natasha AvilaDegrandi, Tiago MarafigaOliveira, Edivaldo Herculano Correa deCioffi, Marcelo de BelloGarnero, Analía del ValleGunski, Ricardo José2017-02-15T18:09:57Z2017-02-15T18:09:57Z201720170215OLIVEIRA, Thays Duarte de et al. Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation. PLoS ONE, v. 12, n. 1, 2017.1932-6203https://patua.iec.gov.br/handle/iec/252410.1371/journal.pone.0169987Birds are characterized by a low proportion of repetitive DNA in their genome when compared to other vertebrates. Among birds, species belonging to Piciformes order, such as woodpeckers, show a relatively higher amount of these sequences. The aim of this study was to analyze the distribution of different classes of repetitive DNAÐincluding microsatellites, telomere sequences and 18S rDNAÐin the karyotype of three Picidae species (Aves, Piciformes)ÐColaptes melanochloros (2n = 84), Colaptes campestris (2n = 84) and Melanerpes candidus (2n = 64)±by means of fluorescence in situ hybridization. Clusters of 18S rDNA were found in one microchromosome pair in each of the three species, coinciding to a region of (CGG)10 sequence accumulation. Interstitial telomeric sequences were found in some macrochromosomes pairs, indicating possible regions of fusions, which can be related to variation of diploid number in the family. Only one, from the 11 different microsatellite sequences used, did not produce any signals. Both species of genus Colaptes showed a similar distribution of microsatellite sequences, with some difference when compared to M. candidus. Microsatellites were found preferentially in the centromeric and telomeric regions of micro and macrochromosomes. However, some sequences produced patterns of interstitial bands in the Z chromosome, which corresponds to the largest element of the karyotype in all three species. This was not observed in theWchromosome of Colaptes melanochloros, which is heterochromatic in most of its length, but was not hybridized by any of the sequences used. These results highlight the importance of microsatellite sequences in differentiation of sex chromosomes, and the accumulation of these sequences is probably responsible for the enlargement of the Z chromosome.Universidade Federal do Pampa. Programa de Pós-Graduação em Ciências Biológicas. São Gabriel, RS, Brazil.Universidade Federal do Rio Grande do Sul. Programa de Pós-Graduação em Genética e Biologia Molecular. Porto Alegre, RS, Brazil.Universidade Federal do Pampa. Programa de Pós-Graduação em Ciências Biológicas. São Gabriel, RS, Brazil.Universidade Federal do Paraná. Programa de Pós-Graduação em Genética. Curitiba, PR, Brazil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, Brasil / Universidade Federal do Pará. Instituto de Ciências Exatas e Naturais, Belém, PA, Brazil.Universidade Federal de São Carlos. Departamento de Genética e Evolução. São Carlos, SP, BrazilUniversidade Federal do Pampa. Programa de Pós-Graduação em Ciências Biológicas. São Gabriel, RS, Brazil.engPublic Library of ScienceGenomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiationinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAves / anatomia & histologiaGenomaCariotipagemMapeamento CromossômicoCitogenética / métodosPiciformesinfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECTHUMBNAILGenomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation.pdf.jpgGenomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation.pdf.jpgGenerated Thumbnailimage/jpeg5932https://patua.iec.gov.br/bitstreams/b17657e4-ed67-4b58-9ad9-56ab95dfa2e8/downloade6acb1661a929b8dda40c31602d819ccMD57ORIGINALGenomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation.pdfGenomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation.pdfapplication/pdf1379578https://patua.iec.gov.br/bitstreams/a42c0404-9a30-45c7-a7b5-357856f5fc3a/download6aa546aa6d1c098f261848dce328bf1bMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-871https://patua.iec.gov.br/bitstreams/75d029d2-9421-416f-9db5-a49d627f9d96/download52f1732ea66fbd1123abe39f5373b797MD52TEXTOLIVEIRApone.0169987.pdf.txtOLIVEIRApone.0169987.pdf.txtExtracted texttext/plain31376https://patua.iec.gov.br/bitstreams/d5145e3d-cebe-4047-9e41-3cd03d9abb4f/download8bc6ed4fb4c0b5e4b78f343c6208f638MD53Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation.pdf.txtGenomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation.pdf.txtExtracted texttext/plain33910https://patua.iec.gov.br/bitstreams/4cfc7345-40e7-434a-8a95-8feaf70a8fa9/download4636b6cd70d4a8a5e8bc3ccb4521f6d1MD56iec/25242022-10-21 00:45:36.413oai:patua.iec.gov.br:iec/2524https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-21T00:45:36Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)falseVG9kb3Mgb3MgZG9jdW1lbnRvcyBkZXNzYSBjb2xlw6fDo28gc2VndWVtIGEgTGljZW7Dp2EgQ3JlYXRpdmUgY29tbW9ucy4=
dc.title.pt_BR.fl_str_mv Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
title Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
spellingShingle Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
Oliveira, Thays Duarte de
Aves / anatomia & histologia
Genoma
Cariotipagem
Mapeamento Cromossômico
Citogenética / métodos
Piciformes
title_short Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
title_full Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
title_fullStr Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
title_full_unstemmed Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
title_sort Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation
author Oliveira, Thays Duarte de
author_facet Oliveira, Thays Duarte de
Kretschmer, Rafael
Bertocchi, Natasha Avila
Degrandi, Tiago Marafiga
Oliveira, Edivaldo Herculano Correa de
Cioffi, Marcelo de Bello
Garnero, Analía del Valle
Gunski, Ricardo José
author_role author
author2 Kretschmer, Rafael
Bertocchi, Natasha Avila
Degrandi, Tiago Marafiga
Oliveira, Edivaldo Herculano Correa de
Cioffi, Marcelo de Bello
Garnero, Analía del Valle
Gunski, Ricardo José
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Oliveira, Thays Duarte de
Kretschmer, Rafael
Bertocchi, Natasha Avila
Degrandi, Tiago Marafiga
Oliveira, Edivaldo Herculano Correa de
Cioffi, Marcelo de Bello
Garnero, Analía del Valle
Gunski, Ricardo José
dc.subject.decsPrimary.pt_BR.fl_str_mv Aves / anatomia & histologia
Genoma
Cariotipagem
Mapeamento Cromossômico
Citogenética / métodos
Piciformes
topic Aves / anatomia & histologia
Genoma
Cariotipagem
Mapeamento Cromossômico
Citogenética / métodos
Piciformes
description Birds are characterized by a low proportion of repetitive DNA in their genome when compared to other vertebrates. Among birds, species belonging to Piciformes order, such as woodpeckers, show a relatively higher amount of these sequences. The aim of this study was to analyze the distribution of different classes of repetitive DNAÐincluding microsatellites, telomere sequences and 18S rDNAÐin the karyotype of three Picidae species (Aves, Piciformes)ÐColaptes melanochloros (2n = 84), Colaptes campestris (2n = 84) and Melanerpes candidus (2n = 64)±by means of fluorescence in situ hybridization. Clusters of 18S rDNA were found in one microchromosome pair in each of the three species, coinciding to a region of (CGG)10 sequence accumulation. Interstitial telomeric sequences were found in some macrochromosomes pairs, indicating possible regions of fusions, which can be related to variation of diploid number in the family. Only one, from the 11 different microsatellite sequences used, did not produce any signals. Both species of genus Colaptes showed a similar distribution of microsatellite sequences, with some difference when compared to M. candidus. Microsatellites were found preferentially in the centromeric and telomeric regions of micro and macrochromosomes. However, some sequences produced patterns of interstitial bands in the Z chromosome, which corresponds to the largest element of the karyotype in all three species. This was not observed in theWchromosome of Colaptes melanochloros, which is heterochromatic in most of its length, but was not hybridized by any of the sequences used. These results highlight the importance of microsatellite sequences in differentiation of sex chromosomes, and the accumulation of these sequences is probably responsible for the enlargement of the Z chromosome.
publishDate 2017
dc.date.iso.-.fl_str_mv 20170215
dc.date.accessioned.fl_str_mv 2017-02-15T18:09:57Z
dc.date.available.fl_str_mv 2017-02-15T18:09:57Z
dc.date.issued.fl_str_mv 2017
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dc.identifier.citation.fl_str_mv OLIVEIRA, Thays Duarte de et al. Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation. PLoS ONE, v. 12, n. 1, 2017.
dc.identifier.uri.fl_str_mv https://patua.iec.gov.br/handle/iec/2524
dc.identifier.issn.-.fl_str_mv 1932-6203
dc.identifier.doi.-.fl_str_mv 10.1371/journal.pone.0169987
identifier_str_mv OLIVEIRA, Thays Duarte de et al. Genomic organization of repetitive DNA in woodpeckers (Aves, Piciformes): implications for karyotype and ZW sex chromosome differentiation. PLoS ONE, v. 12, n. 1, 2017.
1932-6203
10.1371/journal.pone.0169987
url https://patua.iec.gov.br/handle/iec/2524
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