Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022

Detalhes bibliográficos
Autor(a) principal: Claro, Ingra Morales
Data de Publicação: 2022
Outros Autores: Romano, Camila Malta, Candido, Darlan da Silva, Lima, Evelyn Lepka de, Lindoso, José Angelo Lauletta, Ramundo, Mariana Severo, Moreira, Filipe Romero Rebello, Barra, Luiz Alberto Costa, Borges, Luciana Marques Sansão, Medeiros, Lucas Alberto, Tomishige, Marcia Y. S., Moutinho, Tomas, Silva, Anderson José Dias da, Rodrigues, Camila Cristina Martini, Azevedo, Luiz Cesar Fernandes de, Villas-Boas, Lucy Santos, Silva, Camila Alves Maia da, Coletti, Thaís Moura, Manuli, Erika R., O’Toole, Aine, Quick, Joshua, Loman, Nicholas, Rambaut, Andrew, Faria, Nuno R., Figueiredo-Mello, Claudia, Sabino, Ester Cerdeira
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista do Instituto de Medicina Tropical de São Paulo
Texto Completo: https://www.revistas.usp.br/rimtsp/article/view/199416
Resumo: Monkeypox virus (MPXV), a zoonotic virus endemic to the African continent, has been reported in 33 non-endemic countries since May 2022. We report an almost complete genome of the first confirmed case of MPXV in Brazil. Shotgun metagenomic sequencing was completed in 18 hours, from DNA extraction to consensus sequence generation.
id IMT-1_20333e9700d490c768d21c2f474b09fe
oai_identifier_str oai:revistas.usp.br:article/199416
network_acronym_str IMT-1
network_name_str Revista do Instituto de Medicina Tropical de São Paulo
repository_id_str
spelling Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022Viral metagenomicsMonkeypox virusWest African cladeGenomic surveillanceBrazilMonkeypox virus (MPXV), a zoonotic virus endemic to the African continent, has been reported in 33 non-endemic countries since May 2022. We report an almost complete genome of the first confirmed case of MPXV in Brazil. Shotgun metagenomic sequencing was completed in 18 hours, from DNA extraction to consensus sequence generation.Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo2022-06-27info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/rimtsp/article/view/19941610.1590/S1678-9946202264048 Revista do Instituto de Medicina Tropical de São Paulo; Vol. 64 (2022); e48Revista do Instituto de Medicina Tropical de São Paulo; Vol. 64 (2022); e48Revista do Instituto de Medicina Tropical de São Paulo; v. 64 (2022); e481678-99460036-4665reponame:Revista do Instituto de Medicina Tropical de São Pauloinstname:Instituto de Medicina Tropical (IMT)instacron:IMTenghttps://www.revistas.usp.br/rimtsp/article/view/199416/183446Copyright (c) 2022 Ingra Morales Claro, Camila Malta Romano, Darlan da Silva Candido, Evelyn Lepka de Lima, José Angelo Lauletta Lindoso, Mariana Severo Ramundo, Filipe Romero Rebello Moreira, Luiz Alberto Costa Barra, Luciana Marques Sansão Borges, Lucas Alberto Medeiros, Marcia Y. S. Tomishige, Tomas Moutinho, Anderson José Dias da Silva, Camila Cristina Martini Rodrigues, Luiz Cesar Fernandes de Azevedo, Lucy Santos Villas-Boas, Camila Alves Maia da Silva, Thaís Moura Coletti, Erika R. Manuli, Aine O’Toole, Joshua Quick, Nicholas Loman, Andrew Rambaut, Nuno R. Faria, Claudia Figueiredo-Mello, Ester Cerdeira Sabinohttps://creativecommons.org/licenses/by-nc/4.0info:eu-repo/semantics/openAccess Claro, Ingra MoralesRomano, Camila Malta Candido, Darlan da Silva Lima, Evelyn Lepka de Lindoso, José Angelo Lauletta Ramundo, Mariana Severo Moreira, Filipe Romero Rebello Barra, Luiz Alberto Costa Borges, Luciana Marques Sansão Medeiros, Lucas Alberto Tomishige, Marcia Y. S. Moutinho, Tomas Silva, Anderson José Dias da Rodrigues, Camila Cristina Martini Azevedo, Luiz Cesar Fernandes de Villas-Boas, Lucy Santos Silva, Camila Alves Maia da Coletti, Thaís MouraManuli, Erika R. O’Toole, Aine Quick, Joshua Loman, Nicholas Rambaut, Andrew Faria, Nuno R. Figueiredo-Mello, Claudia Sabino, Ester Cerdeira 2022-10-10T13:01:46Zoai:revistas.usp.br:article/199416Revistahttp://www.revistas.usp.br/rimtsp/indexPUBhttps://www.revistas.usp.br/rimtsp/oai||revimtsp@usp.br1678-99460036-4665opendoar:2022-12-13T16:53:32.174650Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)true
dc.title.none.fl_str_mv Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
title Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
spellingShingle Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
Claro, Ingra Morales
Viral metagenomics
Monkeypox virus
West African clade
Genomic surveillance
Brazil
title_short Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
title_full Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
title_fullStr Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
title_full_unstemmed Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
title_sort Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022
author Claro, Ingra Morales
author_facet Claro, Ingra Morales
Romano, Camila Malta
Candido, Darlan da Silva
Lima, Evelyn Lepka de
Lindoso, José Angelo Lauletta
Ramundo, Mariana Severo
Moreira, Filipe Romero Rebello
Barra, Luiz Alberto Costa
Borges, Luciana Marques Sansão
Medeiros, Lucas Alberto
Tomishige, Marcia Y. S.
Moutinho, Tomas
Silva, Anderson José Dias da
Rodrigues, Camila Cristina Martini
Azevedo, Luiz Cesar Fernandes de
Villas-Boas, Lucy Santos
Silva, Camila Alves Maia da
Coletti, Thaís Moura
Manuli, Erika R.
O’Toole, Aine
Quick, Joshua
Loman, Nicholas
Rambaut, Andrew
Faria, Nuno R.
Figueiredo-Mello, Claudia
Sabino, Ester Cerdeira
author_role author
author2 Romano, Camila Malta
Candido, Darlan da Silva
Lima, Evelyn Lepka de
Lindoso, José Angelo Lauletta
Ramundo, Mariana Severo
Moreira, Filipe Romero Rebello
Barra, Luiz Alberto Costa
Borges, Luciana Marques Sansão
Medeiros, Lucas Alberto
Tomishige, Marcia Y. S.
Moutinho, Tomas
Silva, Anderson José Dias da
Rodrigues, Camila Cristina Martini
Azevedo, Luiz Cesar Fernandes de
Villas-Boas, Lucy Santos
Silva, Camila Alves Maia da
Coletti, Thaís Moura
Manuli, Erika R.
O’Toole, Aine
Quick, Joshua
Loman, Nicholas
Rambaut, Andrew
Faria, Nuno R.
Figueiredo-Mello, Claudia
Sabino, Ester Cerdeira
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Claro, Ingra Morales
Romano, Camila Malta
Candido, Darlan da Silva
Lima, Evelyn Lepka de
Lindoso, José Angelo Lauletta
Ramundo, Mariana Severo
Moreira, Filipe Romero Rebello
Barra, Luiz Alberto Costa
Borges, Luciana Marques Sansão
Medeiros, Lucas Alberto
Tomishige, Marcia Y. S.
Moutinho, Tomas
Silva, Anderson José Dias da
Rodrigues, Camila Cristina Martini
Azevedo, Luiz Cesar Fernandes de
Villas-Boas, Lucy Santos
Silva, Camila Alves Maia da
Coletti, Thaís Moura
Manuli, Erika R.
O’Toole, Aine
Quick, Joshua
Loman, Nicholas
Rambaut, Andrew
Faria, Nuno R.
Figueiredo-Mello, Claudia
Sabino, Ester Cerdeira
dc.subject.por.fl_str_mv Viral metagenomics
Monkeypox virus
West African clade
Genomic surveillance
Brazil
topic Viral metagenomics
Monkeypox virus
West African clade
Genomic surveillance
Brazil
description Monkeypox virus (MPXV), a zoonotic virus endemic to the African continent, has been reported in 33 non-endemic countries since May 2022. We report an almost complete genome of the first confirmed case of MPXV in Brazil. Shotgun metagenomic sequencing was completed in 18 hours, from DNA extraction to consensus sequence generation.
publishDate 2022
dc.date.none.fl_str_mv 2022-06-27
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/199416
10.1590/S1678-9946202264048
url https://www.revistas.usp.br/rimtsp/article/view/199416
identifier_str_mv 10.1590/S1678-9946202264048
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/rimtsp/article/view/199416/183446
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by-nc/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
publisher.none.fl_str_mv Universidade de São Paulo. Instituto de Medicina Tropical de São Paulo
dc.source.none.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo; Vol. 64 (2022); e48
Revista do Instituto de Medicina Tropical de São Paulo; Vol. 64 (2022); e48
Revista do Instituto de Medicina Tropical de São Paulo; v. 64 (2022); e48
1678-9946
0036-4665
reponame:Revista do Instituto de Medicina Tropical de São Paulo
instname:Instituto de Medicina Tropical (IMT)
instacron:IMT
instname_str Instituto de Medicina Tropical (IMT)
instacron_str IMT
institution IMT
reponame_str Revista do Instituto de Medicina Tropical de São Paulo
collection Revista do Instituto de Medicina Tropical de São Paulo
repository.name.fl_str_mv Revista do Instituto de Medicina Tropical de São Paulo - Instituto de Medicina Tropical (IMT)
repository.mail.fl_str_mv ||revimtsp@usp.br
_version_ 1798951656438628352

Registros relacionados