Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins

Detalhes bibliográficos
Autor(a) principal: Cunha, Haydée A.
Data de Publicação: 2011
Outros Autores: Moraes, Lucas C., Medeiros, Bruna V., Lailson-Brito, José, Silva, Vera Maria Ferreira da, Solé-Cava, António Mateo, Schrago, Carlos Guerra
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/14729
Resumo: Molecular data have provided many insights into cetacean evolution but some unsettled issues still remain. We estimated the topology and timing of cetacean evolutionary relationships using Bayesian and maximum likelihood analyses of complete mitochondrial genomes. In order to clarify the phylogenetic placement of Sotalia and Steno within the Delphinidae, we sequenced three new delphinid mitogenomes. Our analyses support three delphinid clades: one joining Steno and Sotalia (supporting the revised subfamily Stenoninae); another placing Sousa within the Delphininae; and a third, the Globicephalinae, which includes Globicephala, Feresa, Pseudorca, Peponocephala and Grampus. We also conclude that Orcinus does not belong in the Globicephalinae, but Orcaella may be part of that subfamily. Divergence dates were estimated using the relaxed molecular clock calibrated with fossil data. We hypothesise that the timing of separation of the marine and Amazonian Sotalia species (2.3 Ma) coincided with the establishment of the modern Amazon River basin. © 2011 Cunha et al.
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spelling Cunha, Haydée A.Moraes, Lucas C.Medeiros, Bruna V.Lailson-Brito, JoséSilva, Vera Maria Ferreira daSolé-Cava, António MateoSchrago, Carlos Guerra2020-04-24T17:01:02Z2020-04-24T17:01:02Z2011https://repositorio.inpa.gov.br/handle/1/1472910.1371/journal.pone.0028297Molecular data have provided many insights into cetacean evolution but some unsettled issues still remain. We estimated the topology and timing of cetacean evolutionary relationships using Bayesian and maximum likelihood analyses of complete mitochondrial genomes. In order to clarify the phylogenetic placement of Sotalia and Steno within the Delphinidae, we sequenced three new delphinid mitogenomes. Our analyses support three delphinid clades: one joining Steno and Sotalia (supporting the revised subfamily Stenoninae); another placing Sousa within the Delphininae; and a third, the Globicephalinae, which includes Globicephala, Feresa, Pseudorca, Peponocephala and Grampus. We also conclude that Orcinus does not belong in the Globicephalinae, but Orcaella may be part of that subfamily. Divergence dates were estimated using the relaxed molecular clock calibrated with fossil data. We hypothesise that the timing of separation of the marine and Amazonian Sotalia species (2.3 Ma) coincided with the establishment of the modern Amazon River basin. © 2011 Cunha et al.Volume 6, Número 12Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessAnimals TissueBayes TheoremCladisticsDelphininaeDolphinEvolutionFeresaFossilGlobicephalinaeGrampusMaximum Likelihood MethodGenome, MitochondrialMolecular ClockMolecular PhylogenyNonhumanNucleotide SequenceOrcaellaOrcinusPeponocephalaPseudorcaRiver BasinSotaliaSousaSpecies DiversityStenonStenoninaeAnimalsBiological ModelCalibrationCetaceaDna SequenceDolphinGeneticsGenome, MitochondrialEvolution, MolecularMolecular GeneticsPhylogenyPhysiologySouth AmericaStatistical ModelTimeDna, MitochondrialAnimalssBayes TheoremBiological EvolutionCalibrationCetaceaDna, MitochondrialDolphinsEvolution, MolecularGenome, MitochondrialLikelihood FunctionsModels, BiologicalModels, StatisticalMolecular Sequence DataPhylogenySequence Analysis, DnaSouth AmericaTime FactorsPhylogenetic status and timescale for the diversification of Steno and Sotalia dolphinsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePLoS ONEengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf458657https://repositorio.inpa.gov.br/bitstream/1/14729/1/artigo-inpa.pdffc8bd6a38cd995bf1b1bcd9b050bd972MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/14729/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/147292020-07-14 10:17:36.261oai:repositorio:1/14729Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T14:17:36Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
title Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
spellingShingle Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
Cunha, Haydée A.
Animals Tissue
Bayes Theorem
Cladistics
Delphininae
Dolphin
Evolution
Feresa
Fossil
Globicephalinae
Grampus
Maximum Likelihood Method
Genome, Mitochondrial
Molecular Clock
Molecular Phylogeny
Nonhuman
Nucleotide Sequence
Orcaella
Orcinus
Peponocephala
Pseudorca
River Basin
Sotalia
Sousa
Species Diversity
Stenon
Stenoninae
Animals
Biological Model
Calibration
Cetacea
Dna Sequence
Dolphin
Genetics
Genome, Mitochondrial
Evolution, Molecular
Molecular Genetics
Phylogeny
Physiology
South America
Statistical Model
Time
Dna, Mitochondrial
Animalss
Bayes Theorem
Biological Evolution
Calibration
Cetacea
Dna, Mitochondrial
Dolphins
Evolution, Molecular
Genome, Mitochondrial
Likelihood Functions
Models, Biological
Models, Statistical
Molecular Sequence Data
Phylogeny
Sequence Analysis, Dna
South America
Time Factors
title_short Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
title_full Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
title_fullStr Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
title_full_unstemmed Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
title_sort Phylogenetic status and timescale for the diversification of Steno and Sotalia dolphins
author Cunha, Haydée A.
author_facet Cunha, Haydée A.
Moraes, Lucas C.
Medeiros, Bruna V.
Lailson-Brito, José
Silva, Vera Maria Ferreira da
Solé-Cava, António Mateo
Schrago, Carlos Guerra
author_role author
author2 Moraes, Lucas C.
Medeiros, Bruna V.
Lailson-Brito, José
Silva, Vera Maria Ferreira da
Solé-Cava, António Mateo
Schrago, Carlos Guerra
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Cunha, Haydée A.
Moraes, Lucas C.
Medeiros, Bruna V.
Lailson-Brito, José
Silva, Vera Maria Ferreira da
Solé-Cava, António Mateo
Schrago, Carlos Guerra
dc.subject.eng.fl_str_mv Animals Tissue
Bayes Theorem
Cladistics
Delphininae
Dolphin
Evolution
Feresa
Fossil
Globicephalinae
Grampus
Maximum Likelihood Method
Genome, Mitochondrial
Molecular Clock
Molecular Phylogeny
Nonhuman
Nucleotide Sequence
Orcaella
Orcinus
Peponocephala
Pseudorca
River Basin
Sotalia
Sousa
Species Diversity
Stenon
Stenoninae
Animals
Biological Model
Calibration
Cetacea
Dna Sequence
Dolphin
Genetics
Genome, Mitochondrial
Evolution, Molecular
Molecular Genetics
Phylogeny
Physiology
South America
Statistical Model
Time
Dna, Mitochondrial
Animalss
Bayes Theorem
Biological Evolution
Calibration
Cetacea
Dna, Mitochondrial
Dolphins
Evolution, Molecular
Genome, Mitochondrial
Likelihood Functions
Models, Biological
Models, Statistical
Molecular Sequence Data
Phylogeny
Sequence Analysis, Dna
South America
Time Factors
topic Animals Tissue
Bayes Theorem
Cladistics
Delphininae
Dolphin
Evolution
Feresa
Fossil
Globicephalinae
Grampus
Maximum Likelihood Method
Genome, Mitochondrial
Molecular Clock
Molecular Phylogeny
Nonhuman
Nucleotide Sequence
Orcaella
Orcinus
Peponocephala
Pseudorca
River Basin
Sotalia
Sousa
Species Diversity
Stenon
Stenoninae
Animals
Biological Model
Calibration
Cetacea
Dna Sequence
Dolphin
Genetics
Genome, Mitochondrial
Evolution, Molecular
Molecular Genetics
Phylogeny
Physiology
South America
Statistical Model
Time
Dna, Mitochondrial
Animalss
Bayes Theorem
Biological Evolution
Calibration
Cetacea
Dna, Mitochondrial
Dolphins
Evolution, Molecular
Genome, Mitochondrial
Likelihood Functions
Models, Biological
Models, Statistical
Molecular Sequence Data
Phylogeny
Sequence Analysis, Dna
South America
Time Factors
description Molecular data have provided many insights into cetacean evolution but some unsettled issues still remain. We estimated the topology and timing of cetacean evolutionary relationships using Bayesian and maximum likelihood analyses of complete mitochondrial genomes. In order to clarify the phylogenetic placement of Sotalia and Steno within the Delphinidae, we sequenced three new delphinid mitogenomes. Our analyses support three delphinid clades: one joining Steno and Sotalia (supporting the revised subfamily Stenoninae); another placing Sousa within the Delphininae; and a third, the Globicephalinae, which includes Globicephala, Feresa, Pseudorca, Peponocephala and Grampus. We also conclude that Orcinus does not belong in the Globicephalinae, but Orcaella may be part of that subfamily. Divergence dates were estimated using the relaxed molecular clock calibrated with fossil data. We hypothesise that the timing of separation of the marine and Amazonian Sotalia species (2.3 Ma) coincided with the establishment of the modern Amazon River basin. © 2011 Cunha et al.
publishDate 2011
dc.date.issued.fl_str_mv 2011
dc.date.accessioned.fl_str_mv 2020-04-24T17:01:02Z
dc.date.available.fl_str_mv 2020-04-24T17:01:02Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/14729
dc.identifier.doi.none.fl_str_mv 10.1371/journal.pone.0028297
url https://repositorio.inpa.gov.br/handle/1/14729
identifier_str_mv 10.1371/journal.pone.0028297
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 6, Número 12
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv PLoS ONE
publisher.none.fl_str_mv PLoS ONE
dc.source.none.fl_str_mv reponame:Repositório Institucional do INPA
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instacron_str INPA
institution INPA
reponame_str Repositório Institucional do INPA
collection Repositório Institucional do INPA
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