Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family

Detalhes bibliográficos
Autor(a) principal: Toma, Gustavo Akira
Data de Publicação: 2019
Outros Autores: Moraes, Renata Luiza Rosa de, Sassi, Francisco de Menezes Cavalcante, Bertollo, Luiz Antônio Carlos, Oliveira, Ezequiel Aguiar de, Ráb, Petr, Sember, Alexandr, Liehr, Thomas, Hatanaka, Terumi, Viana, Patrik Ferreira, Marinho, Manoela Maria Ferreira, Feldberg, Eliana, Cioffi, Marcelo de Bello
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/14652
Resumo: Lebiasinidae is a small fish family composed by miniature to small-sized fishes with few cytogenetic data (most of them limited to descriptions of diploid chromosome numbers), thus preventing any evolutionary comparative studies at the chromosomal level. In the present study, we are providing, the first cytogenetic data for the red spotted tetra, Copeina guttata, including the standard karyotype, C-banding, repetitive DNA mapping by fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH), providing chromosomal patterns and novel insights into the karyotype differentiation of the family. Males and females share diploid chromosome number 2n = 42 and karyotype composed of 2 metacentric (m), 4 submetacentric (sm) and 36 subtelocentric to acrocentric (st-a) chromosomes. Blocks of constitutive heterochromatin were observed in the centromeric and interstitial regions of several chromosomes, in addition to a remarkably large distal block, heteromorphic in size, which fully corresponded with the 18S rDNA sites in the fourth chromosomal pair. This overlap was confirmed by 5S/18S rDNA dual-color FISH. On the other hand, 5S rDNA clusters were situated in the long and short arms of the 2nd and 15th pairs, respectively. No sex-linked karyotype differences were revealed by male/female CGH experiments. The genomic probes from other two lebiasinid species, Lebiasina melanoguttata and Pyrrhulina brevis, showed positive hybridization signals only in the NOR region in the genome of C. guttata. We demonstrated that karyotype diversification in lebiasinids was accompanied by a series of structural and numeric chromosome rearrangements of different types, including particularly fusions and fissions. © 2019 Toma et al.
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spelling Toma, Gustavo AkiraMoraes, Renata Luiza Rosa deSassi, Francisco de Menezes CavalcanteBertollo, Luiz Antônio CarlosOliveira, Ezequiel Aguiar deRáb, PetrSember, AlexandrLiehr, ThomasHatanaka, TerumiViana, Patrik FerreiraMarinho, Manoela Maria FerreiraFeldberg, ElianaCioffi, Marcelo de Bello2020-04-24T16:59:56Z2020-04-24T16:59:56Z2019https://repositorio.inpa.gov.br/handle/1/1465210.1371/journal.pone.0226746Lebiasinidae is a small fish family composed by miniature to small-sized fishes with few cytogenetic data (most of them limited to descriptions of diploid chromosome numbers), thus preventing any evolutionary comparative studies at the chromosomal level. In the present study, we are providing, the first cytogenetic data for the red spotted tetra, Copeina guttata, including the standard karyotype, C-banding, repetitive DNA mapping by fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH), providing chromosomal patterns and novel insights into the karyotype differentiation of the family. Males and females share diploid chromosome number 2n = 42 and karyotype composed of 2 metacentric (m), 4 submetacentric (sm) and 36 subtelocentric to acrocentric (st-a) chromosomes. Blocks of constitutive heterochromatin were observed in the centromeric and interstitial regions of several chromosomes, in addition to a remarkably large distal block, heteromorphic in size, which fully corresponded with the 18S rDNA sites in the fourth chromosomal pair. This overlap was confirmed by 5S/18S rDNA dual-color FISH. On the other hand, 5S rDNA clusters were situated in the long and short arms of the 2nd and 15th pairs, respectively. No sex-linked karyotype differences were revealed by male/female CGH experiments. The genomic probes from other two lebiasinid species, Lebiasina melanoguttata and Pyrrhulina brevis, showed positive hybridization signals only in the NOR region in the genome of C. guttata. We demonstrated that karyotype diversification in lebiasinids was accompanied by a series of structural and numeric chromosome rearrangements of different types, including particularly fusions and fissions. © 2019 Toma et al.Volume 14, Número 12Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessDna 18sDna 5sRepetitive DnaRibosome RnaAnimals ExperimentC BandingCentromereCharaciformesChromosome ArmChromosome Banding PatternChromosome NorChromosome RearrangementComparative Genomic HybridizationControlled StudyCopeina GuttataCytogeneticsDiploidyDna DeterminationFemaleIn Situ Hybridization, FluorescenceGiemsa StainHeterochromatinKaryotypeLebiasina MelanoguttataLebiasinidaeMaleNonhumanPyrrhulina BrevisRed Spotted TetraAnimalsCharaciformesChromosomeClassificationGeneticsEvolution, MolecularPhylogenyAnimalssCharaciformesChromosomesEvolution, MolecularFemaleKaryotypeMalePhylogenyRna, RibosomalCytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the familyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePLoS ONEengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfapplication/pdf1168235https://repositorio.inpa.gov.br/bitstream/1/14652/1/artigo-inpa.pdf50e19ef3c1071dba070f54398772d3e9MD51CC-LICENSElicense_rdfapplication/octet-stream914https://repositorio.inpa.gov.br/bitstream/1/14652/2/license_rdf4d2950bda3d176f570a9f8b328dfbbefMD521/146522020-07-14 09:18:54.762oai:repositorio:1/14652Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-07-14T13:18:54Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
title Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
spellingShingle Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
Toma, Gustavo Akira
Dna 18s
Dna 5s
Repetitive Dna
Ribosome Rna
Animals Experiment
C Banding
Centromere
Characiformes
Chromosome Arm
Chromosome Banding Pattern
Chromosome Nor
Chromosome Rearrangement
Comparative Genomic Hybridization
Controlled Study
Copeina Guttata
Cytogenetics
Diploidy
Dna Determination
Female
In Situ Hybridization, Fluorescence
Giemsa Stain
Heterochromatin
Karyotype
Lebiasina Melanoguttata
Lebiasinidae
Male
Nonhuman
Pyrrhulina Brevis
Red Spotted Tetra
Animals
Characiformes
Chromosome
Classification
Genetics
Evolution, Molecular
Phylogeny
Animalss
Characiformes
Chromosomes
Evolution, Molecular
Female
Karyotype
Male
Phylogeny
Rna, Ribosomal
title_short Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
title_full Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
title_fullStr Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
title_full_unstemmed Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
title_sort Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family
author Toma, Gustavo Akira
author_facet Toma, Gustavo Akira
Moraes, Renata Luiza Rosa de
Sassi, Francisco de Menezes Cavalcante
Bertollo, Luiz Antônio Carlos
Oliveira, Ezequiel Aguiar de
Ráb, Petr
Sember, Alexandr
Liehr, Thomas
Hatanaka, Terumi
Viana, Patrik Ferreira
Marinho, Manoela Maria Ferreira
Feldberg, Eliana
Cioffi, Marcelo de Bello
author_role author
author2 Moraes, Renata Luiza Rosa de
Sassi, Francisco de Menezes Cavalcante
Bertollo, Luiz Antônio Carlos
Oliveira, Ezequiel Aguiar de
Ráb, Petr
Sember, Alexandr
Liehr, Thomas
Hatanaka, Terumi
Viana, Patrik Ferreira
Marinho, Manoela Maria Ferreira
Feldberg, Eliana
Cioffi, Marcelo de Bello
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Toma, Gustavo Akira
Moraes, Renata Luiza Rosa de
Sassi, Francisco de Menezes Cavalcante
Bertollo, Luiz Antônio Carlos
Oliveira, Ezequiel Aguiar de
Ráb, Petr
Sember, Alexandr
Liehr, Thomas
Hatanaka, Terumi
Viana, Patrik Ferreira
Marinho, Manoela Maria Ferreira
Feldberg, Eliana
Cioffi, Marcelo de Bello
dc.subject.eng.fl_str_mv Dna 18s
Dna 5s
Repetitive Dna
Ribosome Rna
Animals Experiment
C Banding
Centromere
Characiformes
Chromosome Arm
Chromosome Banding Pattern
Chromosome Nor
Chromosome Rearrangement
Comparative Genomic Hybridization
Controlled Study
Copeina Guttata
Cytogenetics
Diploidy
Dna Determination
Female
In Situ Hybridization, Fluorescence
Giemsa Stain
Heterochromatin
Karyotype
Lebiasina Melanoguttata
Lebiasinidae
Male
Nonhuman
Pyrrhulina Brevis
Red Spotted Tetra
Animals
Characiformes
Chromosome
Classification
Genetics
Evolution, Molecular
Phylogeny
Animalss
Characiformes
Chromosomes
Evolution, Molecular
Female
Karyotype
Male
Phylogeny
Rna, Ribosomal
topic Dna 18s
Dna 5s
Repetitive Dna
Ribosome Rna
Animals Experiment
C Banding
Centromere
Characiformes
Chromosome Arm
Chromosome Banding Pattern
Chromosome Nor
Chromosome Rearrangement
Comparative Genomic Hybridization
Controlled Study
Copeina Guttata
Cytogenetics
Diploidy
Dna Determination
Female
In Situ Hybridization, Fluorescence
Giemsa Stain
Heterochromatin
Karyotype
Lebiasina Melanoguttata
Lebiasinidae
Male
Nonhuman
Pyrrhulina Brevis
Red Spotted Tetra
Animals
Characiformes
Chromosome
Classification
Genetics
Evolution, Molecular
Phylogeny
Animalss
Characiformes
Chromosomes
Evolution, Molecular
Female
Karyotype
Male
Phylogeny
Rna, Ribosomal
description Lebiasinidae is a small fish family composed by miniature to small-sized fishes with few cytogenetic data (most of them limited to descriptions of diploid chromosome numbers), thus preventing any evolutionary comparative studies at the chromosomal level. In the present study, we are providing, the first cytogenetic data for the red spotted tetra, Copeina guttata, including the standard karyotype, C-banding, repetitive DNA mapping by fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH), providing chromosomal patterns and novel insights into the karyotype differentiation of the family. Males and females share diploid chromosome number 2n = 42 and karyotype composed of 2 metacentric (m), 4 submetacentric (sm) and 36 subtelocentric to acrocentric (st-a) chromosomes. Blocks of constitutive heterochromatin were observed in the centromeric and interstitial regions of several chromosomes, in addition to a remarkably large distal block, heteromorphic in size, which fully corresponded with the 18S rDNA sites in the fourth chromosomal pair. This overlap was confirmed by 5S/18S rDNA dual-color FISH. On the other hand, 5S rDNA clusters were situated in the long and short arms of the 2nd and 15th pairs, respectively. No sex-linked karyotype differences were revealed by male/female CGH experiments. The genomic probes from other two lebiasinid species, Lebiasina melanoguttata and Pyrrhulina brevis, showed positive hybridization signals only in the NOR region in the genome of C. guttata. We demonstrated that karyotype diversification in lebiasinids was accompanied by a series of structural and numeric chromosome rearrangements of different types, including particularly fusions and fissions. © 2019 Toma et al.
publishDate 2019
dc.date.issued.fl_str_mv 2019
dc.date.accessioned.fl_str_mv 2020-04-24T16:59:56Z
dc.date.available.fl_str_mv 2020-04-24T16:59:56Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/14652
dc.identifier.doi.none.fl_str_mv 10.1371/journal.pone.0226746
url https://repositorio.inpa.gov.br/handle/1/14652
identifier_str_mv 10.1371/journal.pone.0226746
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 14, Número 12
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv PLoS ONE
publisher.none.fl_str_mv PLoS ONE
dc.source.none.fl_str_mv reponame:Repositório Institucional do INPA
instname:Instituto Nacional de Pesquisas da Amazônia (INPA)
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institution INPA
reponame_str Repositório Institucional do INPA
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