Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane

Detalhes bibliográficos
Autor(a) principal: Timmers, Peer H. A.
Data de Publicação: 2015
Outros Autores: Widjaja-Greefkes, H. C. Aura, Ramiro-Garcia, Javier, Plugge, C. M., Stams, Alfons Johannes Maria
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/37571
Resumo: Extensive geochemical data showed that significant methane oxidation activity exists in marine sediments. The organisms responsible for this activity are anaerobic methane-oxidizing archaea (ANME) that occur in consortia with sulfate-reducing bacteria. A distinct zonation of different clades of ANME (ANME-1, ANME-2a/b and ANME-2c) exists in marine sediments, which could be related to the localized concentrations of methane, sulfate and sulfide. In order to test this hypothesis we performed long-term incubation of marine sediments under defined conditions with methane as a headspace gas: low or high sulfate (?4 and ?21 mM, respectively) in combination with low or high sulfide (?0.1 and ?4 mM, respectively) concentrations. Control incubations were also performed, with only methane, high sulfate or high sulfide. Methane oxidation was monitored and growth of subtypes ANME-1, ANME-2a/b, and ANME-2c assessed using qPCR analysis. A preliminary archaeal community analysis was performed to gain insight into the ecological and taxonomic diversity. Almost all of the incubations with methane had methane oxidation activity, with the exception of the incubations with combined low sulfate and high sulfide concentrations. Sulfide inhibition occurred only with low sulfate concentrations, which could be due to the lower Gibbs free energy available as well as sulfide toxicity. ANME-2a/b appear to mainly grow in incubations which had high sulfate levels and methane oxidation activity, whereas ANME-1 did not show this distinction. ANME-2c only grew in incubations with only sulfate addition. These findings are consistent with previously published in situ profiling analysis of ANME subclusters in different marine sediments. Interestingly, since all ANME subtypes also grew in incubations with only methane or sulfate addition, ANME may also be able to perform anaerobic methane oxidation under substrate limited conditions or alternatively perform additional metabolic processes.
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spelling Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methaneMethane oxidationANMEAOMSRSulfate reductionNiche separationScience & TechnologyExtensive geochemical data showed that significant methane oxidation activity exists in marine sediments. The organisms responsible for this activity are anaerobic methane-oxidizing archaea (ANME) that occur in consortia with sulfate-reducing bacteria. A distinct zonation of different clades of ANME (ANME-1, ANME-2a/b and ANME-2c) exists in marine sediments, which could be related to the localized concentrations of methane, sulfate and sulfide. In order to test this hypothesis we performed long-term incubation of marine sediments under defined conditions with methane as a headspace gas: low or high sulfate (?4 and ?21 mM, respectively) in combination with low or high sulfide (?0.1 and ?4 mM, respectively) concentrations. Control incubations were also performed, with only methane, high sulfate or high sulfide. Methane oxidation was monitored and growth of subtypes ANME-1, ANME-2a/b, and ANME-2c assessed using qPCR analysis. A preliminary archaeal community analysis was performed to gain insight into the ecological and taxonomic diversity. Almost all of the incubations with methane had methane oxidation activity, with the exception of the incubations with combined low sulfate and high sulfide concentrations. Sulfide inhibition occurred only with low sulfate concentrations, which could be due to the lower Gibbs free energy available as well as sulfide toxicity. ANME-2a/b appear to mainly grow in incubations which had high sulfate levels and methane oxidation activity, whereas ANME-1 did not show this distinction. ANME-2c only grew in incubations with only sulfate addition. These findings are consistent with previously published in situ profiling analysis of ANME subclusters in different marine sediments. Interestingly, since all ANME subtypes also grew in incubations with only methane or sulfate addition, ANME may also be able to perform anaerobic methane oxidation under substrate limited conditions or alternatively perform additional metabolic processes.We want to thank all reviewers for constructive comments, Joan Edwards (Laboratory of Microbiology, WUR) for extensive proof-reading, Bartholomeus van den Bogert (Laboratory of Microbiology, WUR) for help with the MiSeq sequencing and Diego A. Suarez-Zuluaga (Environmental Technology, WUR) for help with carbon dioxide calculations. This research is supported by the Dutch Technology Foundation STW (project 10711), which is part of the Netherlands Organization for Scientific Research (NWO), and which is partly funded by the Ministry of Economic Affairs. Research of AJMS is supported by ERC grant (project 323009) and the Gravitation grant (project 024.002.002) of the Netherlands Ministry of Education, Culture and Science and the Netherlands Science Foundation (NWO).Frontiers MediaUniversidade do MinhoTimmers, Peer H. A.Widjaja-Greefkes, H. C. AuraRamiro-Garcia, JavierPlugge, C. M.Stams, Alfons Johannes Maria2015-092015-09-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/37571engTimmers, Peer H. A.; Widjaja-Greefkes, H. C. Aura; Ramiro-Garcia, Javier; Plugge, Caroline M.; Stams, A. J. M., Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane. Frontiers in Microbiology, 6(988), 1-11, 2015.1664-302X10.3389/fmicb.2015.00988info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:32:49Zoai:repositorium.sdum.uminho.pt:1822/37571Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:28:12.607391Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
title Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
spellingShingle Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
Timmers, Peer H. A.
Methane oxidation
ANME
AOM
SR
Sulfate reduction
Niche separation
Science & Technology
title_short Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
title_full Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
title_fullStr Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
title_full_unstemmed Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
title_sort Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane
author Timmers, Peer H. A.
author_facet Timmers, Peer H. A.
Widjaja-Greefkes, H. C. Aura
Ramiro-Garcia, Javier
Plugge, C. M.
Stams, Alfons Johannes Maria
author_role author
author2 Widjaja-Greefkes, H. C. Aura
Ramiro-Garcia, Javier
Plugge, C. M.
Stams, Alfons Johannes Maria
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Timmers, Peer H. A.
Widjaja-Greefkes, H. C. Aura
Ramiro-Garcia, Javier
Plugge, C. M.
Stams, Alfons Johannes Maria
dc.subject.por.fl_str_mv Methane oxidation
ANME
AOM
SR
Sulfate reduction
Niche separation
Science & Technology
topic Methane oxidation
ANME
AOM
SR
Sulfate reduction
Niche separation
Science & Technology
description Extensive geochemical data showed that significant methane oxidation activity exists in marine sediments. The organisms responsible for this activity are anaerobic methane-oxidizing archaea (ANME) that occur in consortia with sulfate-reducing bacteria. A distinct zonation of different clades of ANME (ANME-1, ANME-2a/b and ANME-2c) exists in marine sediments, which could be related to the localized concentrations of methane, sulfate and sulfide. In order to test this hypothesis we performed long-term incubation of marine sediments under defined conditions with methane as a headspace gas: low or high sulfate (?4 and ?21 mM, respectively) in combination with low or high sulfide (?0.1 and ?4 mM, respectively) concentrations. Control incubations were also performed, with only methane, high sulfate or high sulfide. Methane oxidation was monitored and growth of subtypes ANME-1, ANME-2a/b, and ANME-2c assessed using qPCR analysis. A preliminary archaeal community analysis was performed to gain insight into the ecological and taxonomic diversity. Almost all of the incubations with methane had methane oxidation activity, with the exception of the incubations with combined low sulfate and high sulfide concentrations. Sulfide inhibition occurred only with low sulfate concentrations, which could be due to the lower Gibbs free energy available as well as sulfide toxicity. ANME-2a/b appear to mainly grow in incubations which had high sulfate levels and methane oxidation activity, whereas ANME-1 did not show this distinction. ANME-2c only grew in incubations with only sulfate addition. These findings are consistent with previously published in situ profiling analysis of ANME subclusters in different marine sediments. Interestingly, since all ANME subtypes also grew in incubations with only methane or sulfate addition, ANME may also be able to perform anaerobic methane oxidation under substrate limited conditions or alternatively perform additional metabolic processes.
publishDate 2015
dc.date.none.fl_str_mv 2015-09
2015-09-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/37571
url http://hdl.handle.net/1822/37571
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Timmers, Peer H. A.; Widjaja-Greefkes, H. C. Aura; Ramiro-Garcia, Javier; Plugge, Caroline M.; Stams, A. J. M., Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane. Frontiers in Microbiology, 6(988), 1-11, 2015.
1664-302X
10.3389/fmicb.2015.00988
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
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