KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling

Detalhes bibliográficos
Autor(a) principal: Mochão, Hugo
Data de Publicação: 2020
Outros Autores: Barahona, Pedro, Costa, Rafael S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10362/116894
Resumo: UIDB/50006/2020 CEECIND/01399/2017 UIDB/50022/2020
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spelling KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modelingInformation SystemsBiochemistry, Genetics and Molecular Biology(all)Agricultural and Biological Sciences(all)UIDB/50006/2020 CEECIND/01399/2017 UIDB/50022/2020The KiMoSys (https://kimosys.org), launched in 2014, is a public repository of published experimental data, which contains concentration data of metabolites, protein abundances and flux data. It offers a web-based interface and upload facility to share data, making it accessible in structured formats, while also integrating associated kinetic models related to the data. In addition, it also supplies tools to simplify the construction process of ODE (Ordinary Differential Equations)-based models of metabolic networks. In this release, we present an update of KiMoSys with new data and several new features, including (i) an improved web interface, (ii) a new multi-filter mechanism, (iii) introduction of data visualization tools, (iv) the addition of downloadable data in machine-readable formats, (v) an improved data submission tool, (vi) the integration of a kinetic model simulation environment and (vii) the introduction of a unique persistent identifier system. We believe that this new version will improve its role as a valuable resource for the systems biology community. Database URL:  www.kimosys.org.DI - Departamento de InformáticaNOVALincsLAQV@REQUIMTEDQ - Departamento de QuímicaRUNMochão, HugoBarahona, PedroCosta, Rafael S.2021-05-03T22:54:09Z2020-11-282020-11-28T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10362/116894eng1758-0463PURE: 26884673https://doi.org/10.1093/database/baaa093info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:59:46Zoai:run.unl.pt:10362/116894Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:43:21.370647Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
title KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
spellingShingle KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
Mochão, Hugo
Information Systems
Biochemistry, Genetics and Molecular Biology(all)
Agricultural and Biological Sciences(all)
title_short KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
title_full KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
title_fullStr KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
title_full_unstemmed KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
title_sort KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
author Mochão, Hugo
author_facet Mochão, Hugo
Barahona, Pedro
Costa, Rafael S.
author_role author
author2 Barahona, Pedro
Costa, Rafael S.
author2_role author
author
dc.contributor.none.fl_str_mv DI - Departamento de Informática
NOVALincs
LAQV@REQUIMTE
DQ - Departamento de Química
RUN
dc.contributor.author.fl_str_mv Mochão, Hugo
Barahona, Pedro
Costa, Rafael S.
dc.subject.por.fl_str_mv Information Systems
Biochemistry, Genetics and Molecular Biology(all)
Agricultural and Biological Sciences(all)
topic Information Systems
Biochemistry, Genetics and Molecular Biology(all)
Agricultural and Biological Sciences(all)
description UIDB/50006/2020 CEECIND/01399/2017 UIDB/50022/2020
publishDate 2020
dc.date.none.fl_str_mv 2020-11-28
2020-11-28T00:00:00Z
2021-05-03T22:54:09Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10362/116894
url http://hdl.handle.net/10362/116894
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1758-0463
PURE: 26884673
https://doi.org/10.1093/database/baaa093
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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