Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus

Detalhes bibliográficos
Autor(a) principal: Jorge, Paula Alexandra Silva
Data de Publicação: 2019
Outros Autores: Alves, Diana, Pereira, Maria Olívia
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/60437
Resumo: Growing antimicrobial resistance and biofilm infection resilience have led researchers to study the potential laying in antimicrobial combinations, including those encompassing enzymes with biofilm disrupting abilities. Therefore, this work set out to evaluate the undergone journey of antimicrobial enzyme combination research and gain insights into its current status and most promising leads. Expert curators annotated and analysed all published experimental data on enzyme-encompassing combinations for two major biofilm-forming pathogens, Pseudomonas aeruginosa and Staphylococcus aureus. This entailed the construction of the first publically accessible online database on antimicrobial enzyme combinations, the Antimicrobial Enzyme Combinations Database (www.ceb.uminho.pt/aecd). Gathered data was also reconstructed as knowledge-networks to help analyse and visualize annotated entities (e.g. enzymes, methods, strains, combination outputs). The database currently holds 122 and 206 annotated combinations for P. aeruginosa and S. aureus, respectively, and their analysis allowed a systematic review of the available evidence on enzyme combinations, reliably illustrating the studies being performed. The most tested enzymes (e.g. lysozyme, DNAse, lysostaphin) were scrutinised and the rationale behind each combination explained. This research area is still growing even though current research gaps/opportunities were identified, such as lack of biofilm testing and of studies on polymicrobial scenarios. Hopefully, this work will shed light on the synergetic potential resting in enzyme combinations and alleviate some of the time and resource-consuming tasks related to enzyme combination research by helping the selection and design of new enzyme related therapeutic options for P. aeruginosa and S. aureus infections.
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spelling Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureusAntimicrobial combinationsEnzymesPseudomonas aeruginosaStaphylococcus aureusDatabaseScience & TechnologyGrowing antimicrobial resistance and biofilm infection resilience have led researchers to study the potential laying in antimicrobial combinations, including those encompassing enzymes with biofilm disrupting abilities. Therefore, this work set out to evaluate the undergone journey of antimicrobial enzyme combination research and gain insights into its current status and most promising leads. Expert curators annotated and analysed all published experimental data on enzyme-encompassing combinations for two major biofilm-forming pathogens, Pseudomonas aeruginosa and Staphylococcus aureus. This entailed the construction of the first publically accessible online database on antimicrobial enzyme combinations, the Antimicrobial Enzyme Combinations Database (www.ceb.uminho.pt/aecd). Gathered data was also reconstructed as knowledge-networks to help analyse and visualize annotated entities (e.g. enzymes, methods, strains, combination outputs). The database currently holds 122 and 206 annotated combinations for P. aeruginosa and S. aureus, respectively, and their analysis allowed a systematic review of the available evidence on enzyme combinations, reliably illustrating the studies being performed. The most tested enzymes (e.g. lysozyme, DNAse, lysostaphin) were scrutinised and the rationale behind each combination explained. This research area is still growing even though current research gaps/opportunities were identified, such as lack of biofilm testing and of studies on polymicrobial scenarios. Hopefully, this work will shed light on the synergetic potential resting in enzyme combinations and alleviate some of the time and resource-consuming tasks related to enzyme combination research by helping the selection and design of new enzyme related therapeutic options for P. aeruginosa and S. aureus infections.This work was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469 unit and COMPETE 2020 [POCI-01-0145-FEDER-006684] and BioTecNorte operation [NORTE-01-0145-FEDER-000004], funded by the European Regional Development Fund under the scope of Norte2020 - Programa Operacional Regional do Norte. The authors also recognise COMPETE2020 and FCT for the project POCI-01-0145-FEDER-029841.info:eu-repo/semantics/publishedVersionElsevierUniversidade do MinhoJorge, Paula Alexandra SilvaAlves, DianaPereira, Maria Olívia2019-052019-05-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/60437engJorge, Paula; Alves, Diana; Pereira, Maria Olívia, Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus. International Journal of Antimicrobial Agents, 53(5), 598-605, 20190924-85791872-791310.1016/j.ijantimicag.2019.01.00130639529info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:53:43Zoai:repositorium.sdum.uminho.pt:1822/60437Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:53:07.988684Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
title Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
spellingShingle Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
Jorge, Paula Alexandra Silva
Antimicrobial combinations
Enzymes
Pseudomonas aeruginosa
Staphylococcus aureus
Database
Science & Technology
title_short Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
title_full Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
title_fullStr Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
title_full_unstemmed Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
title_sort Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus
author Jorge, Paula Alexandra Silva
author_facet Jorge, Paula Alexandra Silva
Alves, Diana
Pereira, Maria Olívia
author_role author
author2 Alves, Diana
Pereira, Maria Olívia
author2_role author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Jorge, Paula Alexandra Silva
Alves, Diana
Pereira, Maria Olívia
dc.subject.por.fl_str_mv Antimicrobial combinations
Enzymes
Pseudomonas aeruginosa
Staphylococcus aureus
Database
Science & Technology
topic Antimicrobial combinations
Enzymes
Pseudomonas aeruginosa
Staphylococcus aureus
Database
Science & Technology
description Growing antimicrobial resistance and biofilm infection resilience have led researchers to study the potential laying in antimicrobial combinations, including those encompassing enzymes with biofilm disrupting abilities. Therefore, this work set out to evaluate the undergone journey of antimicrobial enzyme combination research and gain insights into its current status and most promising leads. Expert curators annotated and analysed all published experimental data on enzyme-encompassing combinations for two major biofilm-forming pathogens, Pseudomonas aeruginosa and Staphylococcus aureus. This entailed the construction of the first publically accessible online database on antimicrobial enzyme combinations, the Antimicrobial Enzyme Combinations Database (www.ceb.uminho.pt/aecd). Gathered data was also reconstructed as knowledge-networks to help analyse and visualize annotated entities (e.g. enzymes, methods, strains, combination outputs). The database currently holds 122 and 206 annotated combinations for P. aeruginosa and S. aureus, respectively, and their analysis allowed a systematic review of the available evidence on enzyme combinations, reliably illustrating the studies being performed. The most tested enzymes (e.g. lysozyme, DNAse, lysostaphin) were scrutinised and the rationale behind each combination explained. This research area is still growing even though current research gaps/opportunities were identified, such as lack of biofilm testing and of studies on polymicrobial scenarios. Hopefully, this work will shed light on the synergetic potential resting in enzyme combinations and alleviate some of the time and resource-consuming tasks related to enzyme combination research by helping the selection and design of new enzyme related therapeutic options for P. aeruginosa and S. aureus infections.
publishDate 2019
dc.date.none.fl_str_mv 2019-05
2019-05-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/60437
url http://hdl.handle.net/1822/60437
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Jorge, Paula; Alves, Diana; Pereira, Maria Olívia, Catalysing the way towards antimicrobial effectiveness: A systematic analysis and a new online resource for antimicrobialenzyme combinations against Pseudomonas aeruginosa and Staphylococcus aureus. International Journal of Antimicrobial Agents, 53(5), 598-605, 2019
0924-8579
1872-7913
10.1016/j.ijantimicag.2019.01.001
30639529
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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