fastsimcoal2: demographic inference under complex evolutionary scenarios

Detalhes bibliográficos
Autor(a) principal: Excofffier, Laurent
Data de Publicação: 2021
Outros Autores: Marchi, Nina, Marques, David Alexander, Matthey-Doret, Remi, Gouy, Alexandre, Sousa, Vitor C
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/49250
Resumo: fastsimcoal2 is a continuous time coalescent-based genetic simulation program. It extends fastsimcoal by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. Other improvements include multi-threading, handling of population inbreeding, extended input file syntax facilitating the description of complex demographic scenarios, and more efficient simulations of sparsely structured populations and of large chromosomes.
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spelling fastsimcoal2: demographic inference under complex evolutionary scenariosfastsimcoal2 is a continuous time coalescent-based genetic simulation program. It extends fastsimcoal by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. Other improvements include multi-threading, handling of population inbreeding, extended input file syntax facilitating the description of complex demographic scenarios, and more efficient simulations of sparsely structured populations and of large chromosomes.Oxford University PressRepositório da Universidade de LisboaExcofffier, LaurentMarchi, NinaMarques, David AlexanderMatthey-Doret, RemiGouy, AlexandreSousa, Vitor C2021-08-04T13:33:53Z2021-062021-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/49250engLaurent Excofffier, Nina Marchi, David Alexander Marques, Remi Matthey-Doret, Alexandre Gouy, Vitor C Sousa, fastsimcoal2: demographic inference under complex evolutionary scenarios, Bioinformatics, 2021;, btab468, https://doi.org/10.1093/bioinformatics/btab4681460-205910.1093/bioinformatics/btab468info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T16:52:52Zoai:repositorio.ul.pt:10451/49250Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:00:54.525842Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv fastsimcoal2: demographic inference under complex evolutionary scenarios
title fastsimcoal2: demographic inference under complex evolutionary scenarios
spellingShingle fastsimcoal2: demographic inference under complex evolutionary scenarios
Excofffier, Laurent
title_short fastsimcoal2: demographic inference under complex evolutionary scenarios
title_full fastsimcoal2: demographic inference under complex evolutionary scenarios
title_fullStr fastsimcoal2: demographic inference under complex evolutionary scenarios
title_full_unstemmed fastsimcoal2: demographic inference under complex evolutionary scenarios
title_sort fastsimcoal2: demographic inference under complex evolutionary scenarios
author Excofffier, Laurent
author_facet Excofffier, Laurent
Marchi, Nina
Marques, David Alexander
Matthey-Doret, Remi
Gouy, Alexandre
Sousa, Vitor C
author_role author
author2 Marchi, Nina
Marques, David Alexander
Matthey-Doret, Remi
Gouy, Alexandre
Sousa, Vitor C
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Excofffier, Laurent
Marchi, Nina
Marques, David Alexander
Matthey-Doret, Remi
Gouy, Alexandre
Sousa, Vitor C
description fastsimcoal2 is a continuous time coalescent-based genetic simulation program. It extends fastsimcoal by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. Other improvements include multi-threading, handling of population inbreeding, extended input file syntax facilitating the description of complex demographic scenarios, and more efficient simulations of sparsely structured populations and of large chromosomes.
publishDate 2021
dc.date.none.fl_str_mv 2021-08-04T13:33:53Z
2021-06
2021-06-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/49250
url http://hdl.handle.net/10451/49250
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Laurent Excofffier, Nina Marchi, David Alexander Marques, Remi Matthey-Doret, Alexandre Gouy, Vitor C Sousa, fastsimcoal2: demographic inference under complex evolutionary scenarios, Bioinformatics, 2021;, btab468, https://doi.org/10.1093/bioinformatics/btab468
1460-2059
10.1093/bioinformatics/btab468
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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