fastsimcoal2: demographic inference under complex evolutionary scenarios
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10451/49250 |
Resumo: | fastsimcoal2 is a continuous time coalescent-based genetic simulation program. It extends fastsimcoal by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. Other improvements include multi-threading, handling of population inbreeding, extended input file syntax facilitating the description of complex demographic scenarios, and more efficient simulations of sparsely structured populations and of large chromosomes. |
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fastsimcoal2: demographic inference under complex evolutionary scenariosfastsimcoal2 is a continuous time coalescent-based genetic simulation program. It extends fastsimcoal by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. Other improvements include multi-threading, handling of population inbreeding, extended input file syntax facilitating the description of complex demographic scenarios, and more efficient simulations of sparsely structured populations and of large chromosomes.Oxford University PressRepositório da Universidade de LisboaExcofffier, LaurentMarchi, NinaMarques, David AlexanderMatthey-Doret, RemiGouy, AlexandreSousa, Vitor C2021-08-04T13:33:53Z2021-062021-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/49250engLaurent Excofffier, Nina Marchi, David Alexander Marques, Remi Matthey-Doret, Alexandre Gouy, Vitor C Sousa, fastsimcoal2: demographic inference under complex evolutionary scenarios, Bioinformatics, 2021;, btab468, https://doi.org/10.1093/bioinformatics/btab4681460-205910.1093/bioinformatics/btab468info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T16:52:52Zoai:repositorio.ul.pt:10451/49250Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:00:54.525842Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
title |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
spellingShingle |
fastsimcoal2: demographic inference under complex evolutionary scenarios Excofffier, Laurent |
title_short |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
title_full |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
title_fullStr |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
title_full_unstemmed |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
title_sort |
fastsimcoal2: demographic inference under complex evolutionary scenarios |
author |
Excofffier, Laurent |
author_facet |
Excofffier, Laurent Marchi, Nina Marques, David Alexander Matthey-Doret, Remi Gouy, Alexandre Sousa, Vitor C |
author_role |
author |
author2 |
Marchi, Nina Marques, David Alexander Matthey-Doret, Remi Gouy, Alexandre Sousa, Vitor C |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Repositório da Universidade de Lisboa |
dc.contributor.author.fl_str_mv |
Excofffier, Laurent Marchi, Nina Marques, David Alexander Matthey-Doret, Remi Gouy, Alexandre Sousa, Vitor C |
description |
fastsimcoal2 is a continuous time coalescent-based genetic simulation program. It extends fastsimcoal by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework. Other improvements include multi-threading, handling of population inbreeding, extended input file syntax facilitating the description of complex demographic scenarios, and more efficient simulations of sparsely structured populations and of large chromosomes. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-08-04T13:33:53Z 2021-06 2021-06-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10451/49250 |
url |
http://hdl.handle.net/10451/49250 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Laurent Excofffier, Nina Marchi, David Alexander Marques, Remi Matthey-Doret, Alexandre Gouy, Vitor C Sousa, fastsimcoal2: demographic inference under complex evolutionary scenarios, Bioinformatics, 2021;, btab468, https://doi.org/10.1093/bioinformatics/btab468 1460-2059 10.1093/bioinformatics/btab468 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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