Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex

Detalhes bibliográficos
Autor(a) principal: Oliveira, M. M. E.
Data de Publicação: 2015
Outros Autores: Santos, C., Sampaio, Paula, Romeo, Orazio, Almeida-Paes, Rodrigo, Pais, Célia, Lima, Nelson, Zancope-Oliveira, R. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/34726
Resumo: Accurate species identification of the Sporothrix schenckii complex is essential, since identification based only on phenotypic characteristics is often inconclusive due to phenotypic variability within the species. We used matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) for species identification of 70 environmental and clinical isolates of the Sporothrix complex. A reference database was established for MALDI-TOF MS-based species identification according to minor adjustments in the manufacturer's guidelines. The MALDI-TOF MS clearly distinguished strains of Sporothrix brasiliensis, Sporothrix globosa, Sporothrix mexicana, S. schenckii, Sporothrix luriei and Sporothrix pallida, enabling identification of all isolates at the species level, as confirmed by partial calmodulin gene sequence analyses. The present methodology is simple, reliable, rapid and highly suitable for routine identification in clinical mycology laboratories and culture collections, particularly for updating and reclassifying of deposited Sporothrix isolates.
id RCAP_5ecf33728d1ec63e68fc34455e57aba3
oai_identifier_str oai:repositorium.sdum.uminho.pt:1822/34726
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complexSporothrix complexSporotrichosisMALDI-TOF MSCalmodulin geneScience & TechnologyAccurate species identification of the Sporothrix schenckii complex is essential, since identification based only on phenotypic characteristics is often inconclusive due to phenotypic variability within the species. We used matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) for species identification of 70 environmental and clinical isolates of the Sporothrix complex. A reference database was established for MALDI-TOF MS-based species identification according to minor adjustments in the manufacturer's guidelines. The MALDI-TOF MS clearly distinguished strains of Sporothrix brasiliensis, Sporothrix globosa, Sporothrix mexicana, S. schenckii, Sporothrix luriei and Sporothrix pallida, enabling identification of all isolates at the species level, as confirmed by partial calmodulin gene sequence analyses. The present methodology is simple, reliable, rapid and highly suitable for routine identification in clinical mycology laboratories and culture collections, particularly for updating and reclassifying of deposited Sporothrix isolates.The authors wish to thank the following international researchers for generously contributing strains to this study: Conchita Torrielo (EH194, EH252, EH253); Myrtha Arango (04015, 11029, 010221, 10036, 03017, 03022, 12013, 03003, 14879); and Masako Kawasaki (KMU975). Financial support was provided by FAPERJ/Rio de Janeiro, Brazil (grant proc. E-26/110.619/2012) and PAPES VI-Fiocruz/CNPq (Proc. 407693/2012-2) R. M. Z-O. is supported in part by CNPq 304976/2013-0 and FAPERJ E-26/103.157/2011. M. M. E. O. was supported by a grant from CAPES 2445/11-5 and PNPD/CAPES-Fiocruz/Pesquisa Clinica em Doencas Infecciosas. M. M. E. O., C. S. and N. L. thank the FCT Strategic Project PEst-OE/EQB/LA0023/2013 and BioHealth-Biotechnology and Bioengineering approaches to improve health quality, Ref. NORTE-07-0124-FEDER-000027" co-funded by the Programa Operacional Regional do Norte (ON.2 - O Novo Norte), QREN, FEDER. Automated sequencing was done using the genomic platform/DNA sequencing platform at the Fundacao Oswaldo Cruz-PDTIS/FIOCRUZ (RPT01A), Brazil.Elsevier B.V.Universidade do MinhoOliveira, M. M. E.Santos, C.Sampaio, PaulaRomeo, OrazioAlmeida-Paes, RodrigoPais, CéliaLima, NelsonZancope-Oliveira, R. M.2015-022015-02-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/34726eng0923-25081769-712310.1016/j.resmic.2014.12.00825561427info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:21:56Zoai:repositorium.sdum.uminho.pt:1822/34726Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:15:19.769942Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
title Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
spellingShingle Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
Oliveira, M. M. E.
Sporothrix complex
Sporotrichosis
MALDI-TOF MS
Calmodulin gene
Science & Technology
title_short Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
title_full Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
title_fullStr Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
title_full_unstemmed Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
title_sort Development and optimization of a new MALDI-TOF protocol for identification of the Sporothrix species complex
author Oliveira, M. M. E.
author_facet Oliveira, M. M. E.
Santos, C.
Sampaio, Paula
Romeo, Orazio
Almeida-Paes, Rodrigo
Pais, Célia
Lima, Nelson
Zancope-Oliveira, R. M.
author_role author
author2 Santos, C.
Sampaio, Paula
Romeo, Orazio
Almeida-Paes, Rodrigo
Pais, Célia
Lima, Nelson
Zancope-Oliveira, R. M.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Oliveira, M. M. E.
Santos, C.
Sampaio, Paula
Romeo, Orazio
Almeida-Paes, Rodrigo
Pais, Célia
Lima, Nelson
Zancope-Oliveira, R. M.
dc.subject.por.fl_str_mv Sporothrix complex
Sporotrichosis
MALDI-TOF MS
Calmodulin gene
Science & Technology
topic Sporothrix complex
Sporotrichosis
MALDI-TOF MS
Calmodulin gene
Science & Technology
description Accurate species identification of the Sporothrix schenckii complex is essential, since identification based only on phenotypic characteristics is often inconclusive due to phenotypic variability within the species. We used matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) for species identification of 70 environmental and clinical isolates of the Sporothrix complex. A reference database was established for MALDI-TOF MS-based species identification according to minor adjustments in the manufacturer's guidelines. The MALDI-TOF MS clearly distinguished strains of Sporothrix brasiliensis, Sporothrix globosa, Sporothrix mexicana, S. schenckii, Sporothrix luriei and Sporothrix pallida, enabling identification of all isolates at the species level, as confirmed by partial calmodulin gene sequence analyses. The present methodology is simple, reliable, rapid and highly suitable for routine identification in clinical mycology laboratories and culture collections, particularly for updating and reclassifying of deposited Sporothrix isolates.
publishDate 2015
dc.date.none.fl_str_mv 2015-02
2015-02-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/34726
url http://hdl.handle.net/1822/34726
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0923-2508
1769-7123
10.1016/j.resmic.2014.12.008
25561427
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier B.V.
publisher.none.fl_str_mv Elsevier B.V.
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799132599224893440