Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts

Detalhes bibliográficos
Autor(a) principal: Barbosa, Raquel
Data de Publicação: 2018
Outros Autores: Pontes, Ana, Santos, Renata O., Montandon, Gabriela G., De Ponzzes-Gomes, Camila M., Morais, Paula B., Gonçalves, Paula, Rosa, Carlos A., Sampaio, José Paulo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://doi.org/10.1093/gbe/evy132
Resumo: This work was supported by Fundac¸ão para a Ciência e a Tecnologia (Portugal) grants PTDC/AGR-ALI/118590/2010 and PTDC/BIA-EVF/118618/2010 (J.P.S., P.G.), and UID/ Multi/04378/2013 (A.P., J.P.S., P.G.). This work was supported by Conselho Nacional de Desenvolvimento Cientifico e Tecnológico (CNPq—Brazil, process numbers 407415/2013 and 0457499/2014-1, C.A.R.), Fundac¸ão do Amparo a Pesquisa do Estado de Minas Gerais (FAPEMIG, process number APQ-01525-14, C.A.R.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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spelling Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeastscachaca fermentationcomparative and population genomicsdomestication traitsmicrobe domesticationmicrobe population genomicsyeast evolutionary biologyEcology, Evolution, Behavior and SystematicsGeneticsThis work was supported by Fundac¸ão para a Ciência e a Tecnologia (Portugal) grants PTDC/AGR-ALI/118590/2010 and PTDC/BIA-EVF/118618/2010 (J.P.S., P.G.), and UID/ Multi/04378/2013 (A.P., J.P.S., P.G.). This work was supported by Conselho Nacional de Desenvolvimento Cientifico e Tecnológico (CNPq—Brazil, process numbers 407415/2013 and 0457499/2014-1, C.A.R.), Fundac¸ão do Amparo a Pesquisa do Estado de Minas Gerais (FAPEMIG, process number APQ-01525-14, C.A.R.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.The study of microbe domestication has witnessed major advances that contribute to a better understanding of the emergence of artificially selected phenotypes and set the foundations of their rational improvement for biotechnology. Several features make Saccharomyces cerevisiae an ideal model for such a study, notably the availability of a catalogue of signatures of artificial selection and the extensive knowledge available on its biological processes. Here, we investigate with population and comparative genomics a set of strains used for cachaça fermentation, a Brazilian beverage based on the fermentation of sugar cane juice. We ask if the selective pressures posed by this fermentation have given rise to a domesticated lineage distinct from the ones already known, like wine, beer, bread, and sake yeasts. Our results show that cachaça yeasts derive from wine yeasts that have undergone an additional round of domestication, which we define as secondary domestication. As a consequence, cachaça strains combine features of wine yeasts, such as the presence of genes relevant for wine fermentation and advantageous gene inactivations, with features of beer yeasts like resistance to the effects of inhibitory compounds present in molasses. For other markers like those related to sulfite resistance and biotin metabolism our analyses revealed distributions more complex than previously reported that support the secondary domestication hypothesis. We propose a multilayered microbe domestication model encompassing not only transitions from wild to primarily domesticated populations, as in the case of wine yeasts, but also secondary domestications like those of cachaça yeasts.UCIBIO - Applied Molecular Biosciences UnitDCV - Departamento de Ciências da VidaRUNBarbosa, RaquelPontes, AnaSantos, Renata O.Montandon, Gabriela G.De Ponzzes-Gomes, Camila M.Morais, Paula B.Gonçalves, PaulaRosa, Carlos A.Sampaio, José Paulo2019-04-08T22:14:31Z2018-08-012018-08-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article17application/pdfhttps://doi.org/10.1093/gbe/evy132eng1759-6653PURE: 12560899http://www.scopus.com/inward/record.url?scp=85055280560&partnerID=8YFLogxKhttps://doi.org/10.1093/gbe/evy132info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:31:27Zoai:run.unl.pt:10362/66040Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:34:27.374870Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
title Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
spellingShingle Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
Barbosa, Raquel
cachaca fermentation
comparative and population genomics
domestication traits
microbe domestication
microbe population genomics
yeast evolutionary biology
Ecology, Evolution, Behavior and Systematics
Genetics
title_short Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
title_full Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
title_fullStr Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
title_full_unstemmed Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
title_sort Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts
author Barbosa, Raquel
author_facet Barbosa, Raquel
Pontes, Ana
Santos, Renata O.
Montandon, Gabriela G.
De Ponzzes-Gomes, Camila M.
Morais, Paula B.
Gonçalves, Paula
Rosa, Carlos A.
Sampaio, José Paulo
author_role author
author2 Pontes, Ana
Santos, Renata O.
Montandon, Gabriela G.
De Ponzzes-Gomes, Camila M.
Morais, Paula B.
Gonçalves, Paula
Rosa, Carlos A.
Sampaio, José Paulo
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv UCIBIO - Applied Molecular Biosciences Unit
DCV - Departamento de Ciências da Vida
RUN
dc.contributor.author.fl_str_mv Barbosa, Raquel
Pontes, Ana
Santos, Renata O.
Montandon, Gabriela G.
De Ponzzes-Gomes, Camila M.
Morais, Paula B.
Gonçalves, Paula
Rosa, Carlos A.
Sampaio, José Paulo
dc.subject.por.fl_str_mv cachaca fermentation
comparative and population genomics
domestication traits
microbe domestication
microbe population genomics
yeast evolutionary biology
Ecology, Evolution, Behavior and Systematics
Genetics
topic cachaca fermentation
comparative and population genomics
domestication traits
microbe domestication
microbe population genomics
yeast evolutionary biology
Ecology, Evolution, Behavior and Systematics
Genetics
description This work was supported by Fundac¸ão para a Ciência e a Tecnologia (Portugal) grants PTDC/AGR-ALI/118590/2010 and PTDC/BIA-EVF/118618/2010 (J.P.S., P.G.), and UID/ Multi/04378/2013 (A.P., J.P.S., P.G.). This work was supported by Conselho Nacional de Desenvolvimento Cientifico e Tecnológico (CNPq—Brazil, process numbers 407415/2013 and 0457499/2014-1, C.A.R.), Fundac¸ão do Amparo a Pesquisa do Estado de Minas Gerais (FAPEMIG, process number APQ-01525-14, C.A.R.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
publishDate 2018
dc.date.none.fl_str_mv 2018-08-01
2018-08-01T00:00:00Z
2019-04-08T22:14:31Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://doi.org/10.1093/gbe/evy132
url https://doi.org/10.1093/gbe/evy132
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1759-6653
PURE: 12560899
http://www.scopus.com/inward/record.url?scp=85055280560&partnerID=8YFLogxK
https://doi.org/10.1093/gbe/evy132
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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