Characterization of a new podovirus infecting Paenibacillus larvae

Detalhes bibliográficos
Autor(a) principal: Ribeiro, Henrique G.
Data de Publicação: 2019
Outros Autores: Melo, Luís Daniel Rodrigues, Oliveira, Hugo Alexandre Mendes, Boon, Maarten, Lavigne, Rob, Noben, Jean-Paul, Azeredo, Joana, Oliveira, A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/64317
Resumo: The Paenibacillus larvae infecting phage API480 (vB_PlaP_API480) is the first reported podovirus for this bacterial species, with an 58nm icosahedral capsid and a 12×8nm short, non-contractile tail. API480 encodes 77 coding sequences (CDSs) on its 45,026bp dsDNA genome, of which 47 were confirmed using mass spectrometry. This phage has got very limited genomic and proteomic similarity to any other known ones registered in public databases, including P. larvae phages. Comparative genomics indicates API480 is a new species as its a singleton with 28 unique proteins. Interestingly, the lysis module is highly conserved among P. larvae phages, containing a predicted endolysin and two putative holins. The well kept overall genomic organisation (from the structural and morphogenetic modules to the host lysis, DNA replication and metabolism related proteins) confirms a common evolutionary ancestor among P. larvae infecting phages. API480 is able to infect 69% of the 61 field strains with an ERIC I genotype, as well as ERIC II strains. Furthermore, this phage is very stable when exposed to high glucose concentrations and to larval gastrointestinal conditions. This highly-specific phage, with its broad lytic activity and stability in hive conditions, might potentially be used in the biocontrol of American Foulbrood (AFB).
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spelling Characterization of a new podovirus infecting Paenibacillus larvaeScience & TechnologyThe Paenibacillus larvae infecting phage API480 (vB_PlaP_API480) is the first reported podovirus for this bacterial species, with an 58nm icosahedral capsid and a 12×8nm short, non-contractile tail. API480 encodes 77 coding sequences (CDSs) on its 45,026bp dsDNA genome, of which 47 were confirmed using mass spectrometry. This phage has got very limited genomic and proteomic similarity to any other known ones registered in public databases, including P. larvae phages. Comparative genomics indicates API480 is a new species as its a singleton with 28 unique proteins. Interestingly, the lysis module is highly conserved among P. larvae phages, containing a predicted endolysin and two putative holins. The well kept overall genomic organisation (from the structural and morphogenetic modules to the host lysis, DNA replication and metabolism related proteins) confirms a common evolutionary ancestor among P. larvae infecting phages. API480 is able to infect 69% of the 61 field strains with an ERIC I genotype, as well as ERIC II strains. Furthermore, this phage is very stable when exposed to high glucose concentrations and to larval gastrointestinal conditions. This highly-specific phage, with its broad lytic activity and stability in hive conditions, might potentially be used in the biocontrol of American Foulbrood (AFB).Te authors would like to aknowledge Dr. Mariano Higes Pascual from Laboratorio de Patología Apícola del Centro de Investigación Apícola y Agroambiental de Marchamalo (CIAPA-IRIAF) for gently providing us P. larvae isolates and the soil sample from which API480 was isolated. Tis study, carried out under the scope of the project APILYSE, PTDC/CVT-EPI/4008/2014 - POCI-01–0145-FEDER-016598, was supported by FCT - Fundação para a Ciência e a Tecnologia, under the scope of UID/BIO/04469/2019 unit and BioTecNorte operation (NORTE-01-0145-FEDER-000004) funded by the European Regional Development Fund under the scope of Norte2020- Programa Operacional Regional do Norte. HR was supported by FCT through the grant SFRH/BD/128859/2017. MB and RL were supported by KU Leuven through a GOA grant [3E140356].info:eu-repo/semantics/publishedVersionNature ResearchUniversidade do MinhoRibeiro, Henrique G.Melo, Luís Daniel RodriguesOliveira, Hugo Alexandre MendesBoon, MaartenLavigne, RobNoben, Jean-PaulAzeredo, JoanaOliveira, A.2019-12-302019-12-30T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/64317engRibeiro, Henrique G.; Melo, Luís D. R.; Oliveira, Hugo; Boon, Maarten; Lavigne, Rob; Noben, Jean-Paul; Azeredo, Joana; Oliveira, A., Characterization of a new podovirus infecting Paenibacillus larvae. Scientific Reports, 9(20355), 20192045-23222045-232210.1038/s41598-019-56699-y31889094http://www.nature.com/srep/index.htmlinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:43:58Zoai:repositorium.sdum.uminho.pt:1822/64317Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:41:35.126811Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Characterization of a new podovirus infecting Paenibacillus larvae
title Characterization of a new podovirus infecting Paenibacillus larvae
spellingShingle Characterization of a new podovirus infecting Paenibacillus larvae
Ribeiro, Henrique G.
Science & Technology
title_short Characterization of a new podovirus infecting Paenibacillus larvae
title_full Characterization of a new podovirus infecting Paenibacillus larvae
title_fullStr Characterization of a new podovirus infecting Paenibacillus larvae
title_full_unstemmed Characterization of a new podovirus infecting Paenibacillus larvae
title_sort Characterization of a new podovirus infecting Paenibacillus larvae
author Ribeiro, Henrique G.
author_facet Ribeiro, Henrique G.
Melo, Luís Daniel Rodrigues
Oliveira, Hugo Alexandre Mendes
Boon, Maarten
Lavigne, Rob
Noben, Jean-Paul
Azeredo, Joana
Oliveira, A.
author_role author
author2 Melo, Luís Daniel Rodrigues
Oliveira, Hugo Alexandre Mendes
Boon, Maarten
Lavigne, Rob
Noben, Jean-Paul
Azeredo, Joana
Oliveira, A.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Ribeiro, Henrique G.
Melo, Luís Daniel Rodrigues
Oliveira, Hugo Alexandre Mendes
Boon, Maarten
Lavigne, Rob
Noben, Jean-Paul
Azeredo, Joana
Oliveira, A.
dc.subject.por.fl_str_mv Science & Technology
topic Science & Technology
description The Paenibacillus larvae infecting phage API480 (vB_PlaP_API480) is the first reported podovirus for this bacterial species, with an 58nm icosahedral capsid and a 12×8nm short, non-contractile tail. API480 encodes 77 coding sequences (CDSs) on its 45,026bp dsDNA genome, of which 47 were confirmed using mass spectrometry. This phage has got very limited genomic and proteomic similarity to any other known ones registered in public databases, including P. larvae phages. Comparative genomics indicates API480 is a new species as its a singleton with 28 unique proteins. Interestingly, the lysis module is highly conserved among P. larvae phages, containing a predicted endolysin and two putative holins. The well kept overall genomic organisation (from the structural and morphogenetic modules to the host lysis, DNA replication and metabolism related proteins) confirms a common evolutionary ancestor among P. larvae infecting phages. API480 is able to infect 69% of the 61 field strains with an ERIC I genotype, as well as ERIC II strains. Furthermore, this phage is very stable when exposed to high glucose concentrations and to larval gastrointestinal conditions. This highly-specific phage, with its broad lytic activity and stability in hive conditions, might potentially be used in the biocontrol of American Foulbrood (AFB).
publishDate 2019
dc.date.none.fl_str_mv 2019-12-30
2019-12-30T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/64317
url http://hdl.handle.net/1822/64317
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Ribeiro, Henrique G.; Melo, Luís D. R.; Oliveira, Hugo; Boon, Maarten; Lavigne, Rob; Noben, Jean-Paul; Azeredo, Joana; Oliveira, A., Characterization of a new podovirus infecting Paenibacillus larvae. Scientific Reports, 9(20355), 2019
2045-2322
2045-2322
10.1038/s41598-019-56699-y
31889094
http://www.nature.com/srep/index.html
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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