Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study

Detalhes bibliográficos
Autor(a) principal: Brito, Ângela
Data de Publicação: 2012
Outros Autores: Ramos, Vitor, Seabra, Rui, Santos, Arlete, Santos, Catarina, Lopo, Miguel, Ferreira, Sérgio, Martins, António, Mota, Rita, Frazão, Bárbara, Martins, Rosario, Vasconcelos, Vítor, Tamagnini, Paula
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.22/6277
Resumo: Cyanobacteria are important primary producers, and many are able to fix atmospheric nitrogen playing a key role in the marine environment. However, not much is known about the diversity of cyanobacteria in Portuguese marine waters. This paper describes the diversity of 60 strains isolated from benthic habitats in 9 sites (intertidal zones) on the Portuguese South and West coasts. The strains were characterized by a morphological study (light and electron microscopy) and by a molecular characterization (partial 16S rRNA, nifH, nifK, mcyA, mcyE/ndaF, sxtI genes). The morphological analyses revealed 35 morphotypes (15 genera and 16 species) belonging to 4 cyanobacterial Orders/Subsections. The dominant groups among the isolates were the Oscillatoriales. There is a broad congruence between morphological and molecular assignments. The 16S rRNA gene sequences of 9 strains have less than 97% similarity compared to the sequences in the databases, revealing novel cyanobacterial diversity. Phylogenetic analysis, based on partial 16S rRNA gene sequences showed at least 12 clusters. One-third of the isolates are potential N2-fixers, as they exhibit heterocysts or the presence of nif genes was demonstrated by PCR. Additionally, no conventional freshwater toxins genes were detected by PCR screening.
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spelling Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic studyCyanobacteria16S rRNA geneNitrogen fixationMarinePhylogenyToxinsCyanobacteria are important primary producers, and many are able to fix atmospheric nitrogen playing a key role in the marine environment. However, not much is known about the diversity of cyanobacteria in Portuguese marine waters. This paper describes the diversity of 60 strains isolated from benthic habitats in 9 sites (intertidal zones) on the Portuguese South and West coasts. The strains were characterized by a morphological study (light and electron microscopy) and by a molecular characterization (partial 16S rRNA, nifH, nifK, mcyA, mcyE/ndaF, sxtI genes). The morphological analyses revealed 35 morphotypes (15 genera and 16 species) belonging to 4 cyanobacterial Orders/Subsections. The dominant groups among the isolates were the Oscillatoriales. There is a broad congruence between morphological and molecular assignments. The 16S rRNA gene sequences of 9 strains have less than 97% similarity compared to the sequences in the databases, revealing novel cyanobacterial diversity. Phylogenetic analysis, based on partial 16S rRNA gene sequences showed at least 12 clusters. One-third of the isolates are potential N2-fixers, as they exhibit heterocysts or the presence of nif genes was demonstrated by PCR. Additionally, no conventional freshwater toxins genes were detected by PCR screening.ElsevierRepositório Científico do Instituto Politécnico do PortoBrito, ÂngelaRamos, VitorSeabra, RuiSantos, ArleteSantos, CatarinaLopo, MiguelFerreira, SérgioMartins, AntónioMota, RitaFrazão, BárbaraMartins, RosarioVasconcelos, VítorTamagnini, Paula2015-06-11T09:28:11Z20122012-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.22/6277porBrito, Â., Ramos, V., Seabra, R., Santos, A., Santos, C. L., Lopo, M., Ferreira, S., Martins, A., Mota, R., Frazão, B., Martins, R., Vasconcelos, V., & Tamagnini, P. (2012). Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study. Systematic and Applied Microbiology, 35(2), 110–119. https://doi.org/10.1016/j.syapm.2011.07.00310.1016/j.syapm.2011.07.003info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-12-27T01:48:05Zoai:recipp.ipp.pt:10400.22/6277Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:26:45.156214Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
title Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
spellingShingle Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
Brito, Ângela
Cyanobacteria
16S rRNA gene
Nitrogen fixation
Marine
Phylogeny
Toxins
title_short Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
title_full Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
title_fullStr Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
title_full_unstemmed Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
title_sort Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study
author Brito, Ângela
author_facet Brito, Ângela
Ramos, Vitor
Seabra, Rui
Santos, Arlete
Santos, Catarina
Lopo, Miguel
Ferreira, Sérgio
Martins, António
Mota, Rita
Frazão, Bárbara
Martins, Rosario
Vasconcelos, Vítor
Tamagnini, Paula
author_role author
author2 Ramos, Vitor
Seabra, Rui
Santos, Arlete
Santos, Catarina
Lopo, Miguel
Ferreira, Sérgio
Martins, António
Mota, Rita
Frazão, Bárbara
Martins, Rosario
Vasconcelos, Vítor
Tamagnini, Paula
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório Científico do Instituto Politécnico do Porto
dc.contributor.author.fl_str_mv Brito, Ângela
Ramos, Vitor
Seabra, Rui
Santos, Arlete
Santos, Catarina
Lopo, Miguel
Ferreira, Sérgio
Martins, António
Mota, Rita
Frazão, Bárbara
Martins, Rosario
Vasconcelos, Vítor
Tamagnini, Paula
dc.subject.por.fl_str_mv Cyanobacteria
16S rRNA gene
Nitrogen fixation
Marine
Phylogeny
Toxins
topic Cyanobacteria
16S rRNA gene
Nitrogen fixation
Marine
Phylogeny
Toxins
description Cyanobacteria are important primary producers, and many are able to fix atmospheric nitrogen playing a key role in the marine environment. However, not much is known about the diversity of cyanobacteria in Portuguese marine waters. This paper describes the diversity of 60 strains isolated from benthic habitats in 9 sites (intertidal zones) on the Portuguese South and West coasts. The strains were characterized by a morphological study (light and electron microscopy) and by a molecular characterization (partial 16S rRNA, nifH, nifK, mcyA, mcyE/ndaF, sxtI genes). The morphological analyses revealed 35 morphotypes (15 genera and 16 species) belonging to 4 cyanobacterial Orders/Subsections. The dominant groups among the isolates were the Oscillatoriales. There is a broad congruence between morphological and molecular assignments. The 16S rRNA gene sequences of 9 strains have less than 97% similarity compared to the sequences in the databases, revealing novel cyanobacterial diversity. Phylogenetic analysis, based on partial 16S rRNA gene sequences showed at least 12 clusters. One-third of the isolates are potential N2-fixers, as they exhibit heterocysts or the presence of nif genes was demonstrated by PCR. Additionally, no conventional freshwater toxins genes were detected by PCR screening.
publishDate 2012
dc.date.none.fl_str_mv 2012
2012-01-01T00:00:00Z
2015-06-11T09:28:11Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.22/6277
url http://hdl.handle.net/10400.22/6277
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv Brito, Â., Ramos, V., Seabra, R., Santos, A., Santos, C. L., Lopo, M., Ferreira, S., Martins, A., Mota, R., Frazão, B., Martins, R., Vasconcelos, V., & Tamagnini, P. (2012). Culture-dependent characterization of cyanobacterial diversity in the intertidal zones of the Portuguese coast: A polyphasic study. Systematic and Applied Microbiology, 35(2), 110–119. https://doi.org/10.1016/j.syapm.2011.07.003
10.1016/j.syapm.2011.07.003
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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