Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo

Detalhes bibliográficos
Autor(a) principal: Fernandes, Luís
Data de Publicação: 2021
Outros Autores: Carvalho, Sónia, Carneiro, Isa, Henrique, Rui, Tuchin, Valery V., Oliveira, Hélder P., Oliveira, Luís
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.22/19917
Resumo: In this study, we used machine learning techniques to reconstruct the wavelength dependence of the absorption coefficient of human normal and pathological colorectal mucosa tissues. Using only diffuse reflectance spectra from the ex vivo mucosa tissues as input to algorithms, several approaches were tried before obtaining good matching between the generated absorption coefficients and the ones previously calculated for the mucosa tissues from invasive experimental spectral measurements. Considering the optimized match for the results generated with the multilayer perceptron regression method, we were able to identify differentiated accumulation of lipofuscin in the absorption coefficient spectra of both mucosa tissues as we have done before with the corresponding results calculated directly from invasive measurements. Considering the random forest regressor algorithm, the estimated absorption coefficient spectra almost matched the ones previously calculated. By subtracting the absorption of lipofuscin from these spectra, we obtained similar hemoglobin ratios at 410/550 nm: 18.9-fold/9.3-fold for the healthy mucosa and 46.6-fold/24.2-fold for the pathological mucosa, while from direct calculations, those ratios were 19.7-fold/10.1-fold for the healthy mucosa and 33.1-fold/17.3-fold for the pathological mucosa. The higher values obtained in this study indicate a higher blood content in the pathological samples used to measure the diffuse reflectance spectra. In light of such accuracy and sensibility to the presence of hidden absorbers, with a different accumulation between healthy and pathological tissues, good perspectives become available to develop minimally invasive spectroscopy methods for in vivo early detection and monitoring of colorectal cancer.The application of machine learning methods to noninvasivelike diffuse reflectance spectra allowed us to reconstruct the absorption coefficient spectra of human healthy and pathological mucosa tissues from the colorectal wall. Consequently, we were able to obtain differentiated blood and pigment content in both tissues, which can be used for the development of new noninvasive diagnostic methods for colorectal cancer.
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spelling Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivoDiseases and conditionsBloodArtificial neural networksOptical propertiesMachine learningPathologyOptical absorptionSpectroscopyIn this study, we used machine learning techniques to reconstruct the wavelength dependence of the absorption coefficient of human normal and pathological colorectal mucosa tissues. Using only diffuse reflectance spectra from the ex vivo mucosa tissues as input to algorithms, several approaches were tried before obtaining good matching between the generated absorption coefficients and the ones previously calculated for the mucosa tissues from invasive experimental spectral measurements. Considering the optimized match for the results generated with the multilayer perceptron regression method, we were able to identify differentiated accumulation of lipofuscin in the absorption coefficient spectra of both mucosa tissues as we have done before with the corresponding results calculated directly from invasive measurements. Considering the random forest regressor algorithm, the estimated absorption coefficient spectra almost matched the ones previously calculated. By subtracting the absorption of lipofuscin from these spectra, we obtained similar hemoglobin ratios at 410/550 nm: 18.9-fold/9.3-fold for the healthy mucosa and 46.6-fold/24.2-fold for the pathological mucosa, while from direct calculations, those ratios were 19.7-fold/10.1-fold for the healthy mucosa and 33.1-fold/17.3-fold for the pathological mucosa. The higher values obtained in this study indicate a higher blood content in the pathological samples used to measure the diffuse reflectance spectra. In light of such accuracy and sensibility to the presence of hidden absorbers, with a different accumulation between healthy and pathological tissues, good perspectives become available to develop minimally invasive spectroscopy methods for in vivo early detection and monitoring of colorectal cancer.The application of machine learning methods to noninvasivelike diffuse reflectance spectra allowed us to reconstruct the absorption coefficient spectra of human healthy and pathological mucosa tissues from the colorectal wall. Consequently, we were able to obtain differentiated blood and pigment content in both tissues, which can be used for the development of new noninvasive diagnostic methods for colorectal cancer.The work of L. M. Oliveira was supported by the Portuguese Science Foundation (Grant No. FCT-UIDB/04730/2020). The work of V. V. Tuchin was supported by a grant of the Government of the Russian Federation (Registration No. 2020-220-08-2389).AIP PublishingRepositório Científico do Instituto Politécnico do PortoFernandes, LuísCarvalho, SóniaCarneiro, IsaHenrique, RuiTuchin, Valery V.Oliveira, Hélder P.Oliveira, Luís2022-02-11T10:59:37Z20212021-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdftext/plain; charset=utf-8http://hdl.handle.net/10400.22/19917engFernandes, L., Carvalho, S., Carneiro, I., Henrique, R., Tuchin, V.V., Oliveira, H.P., Oliveira, L.M. Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo. Chaos, vol. 31, 053118.10.1063/5.0052088info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-03-13T13:14:42Zoai:recipp.ipp.pt:10400.22/19917Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:39:53.151223Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
title Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
spellingShingle Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
Fernandes, Luís
Diseases and conditions
Blood
Artificial neural networks
Optical properties
Machine learning
Pathology
Optical absorption
Spectroscopy
title_short Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
title_full Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
title_fullStr Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
title_full_unstemmed Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
title_sort Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo
author Fernandes, Luís
author_facet Fernandes, Luís
Carvalho, Sónia
Carneiro, Isa
Henrique, Rui
Tuchin, Valery V.
Oliveira, Hélder P.
Oliveira, Luís
author_role author
author2 Carvalho, Sónia
Carneiro, Isa
Henrique, Rui
Tuchin, Valery V.
Oliveira, Hélder P.
Oliveira, Luís
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório Científico do Instituto Politécnico do Porto
dc.contributor.author.fl_str_mv Fernandes, Luís
Carvalho, Sónia
Carneiro, Isa
Henrique, Rui
Tuchin, Valery V.
Oliveira, Hélder P.
Oliveira, Luís
dc.subject.por.fl_str_mv Diseases and conditions
Blood
Artificial neural networks
Optical properties
Machine learning
Pathology
Optical absorption
Spectroscopy
topic Diseases and conditions
Blood
Artificial neural networks
Optical properties
Machine learning
Pathology
Optical absorption
Spectroscopy
description In this study, we used machine learning techniques to reconstruct the wavelength dependence of the absorption coefficient of human normal and pathological colorectal mucosa tissues. Using only diffuse reflectance spectra from the ex vivo mucosa tissues as input to algorithms, several approaches were tried before obtaining good matching between the generated absorption coefficients and the ones previously calculated for the mucosa tissues from invasive experimental spectral measurements. Considering the optimized match for the results generated with the multilayer perceptron regression method, we were able to identify differentiated accumulation of lipofuscin in the absorption coefficient spectra of both mucosa tissues as we have done before with the corresponding results calculated directly from invasive measurements. Considering the random forest regressor algorithm, the estimated absorption coefficient spectra almost matched the ones previously calculated. By subtracting the absorption of lipofuscin from these spectra, we obtained similar hemoglobin ratios at 410/550 nm: 18.9-fold/9.3-fold for the healthy mucosa and 46.6-fold/24.2-fold for the pathological mucosa, while from direct calculations, those ratios were 19.7-fold/10.1-fold for the healthy mucosa and 33.1-fold/17.3-fold for the pathological mucosa. The higher values obtained in this study indicate a higher blood content in the pathological samples used to measure the diffuse reflectance spectra. In light of such accuracy and sensibility to the presence of hidden absorbers, with a different accumulation between healthy and pathological tissues, good perspectives become available to develop minimally invasive spectroscopy methods for in vivo early detection and monitoring of colorectal cancer.The application of machine learning methods to noninvasivelike diffuse reflectance spectra allowed us to reconstruct the absorption coefficient spectra of human healthy and pathological mucosa tissues from the colorectal wall. Consequently, we were able to obtain differentiated blood and pigment content in both tissues, which can be used for the development of new noninvasive diagnostic methods for colorectal cancer.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021-01-01T00:00:00Z
2022-02-11T10:59:37Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.22/19917
url http://hdl.handle.net/10400.22/19917
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Fernandes, L., Carvalho, S., Carneiro, I., Henrique, R., Tuchin, V.V., Oliveira, H.P., Oliveira, L.M. Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo. Chaos, vol. 31, 053118.
10.1063/5.0052088
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
text/plain; charset=utf-8
dc.publisher.none.fl_str_mv AIP Publishing
publisher.none.fl_str_mv AIP Publishing
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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