Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)

Detalhes bibliográficos
Autor(a) principal: Graça, Inês
Data de Publicação: 2019
Outros Autores: Mendes, Vera M., Marques, Isabel, Duro, Nuno, da Costa, Mário, Ramalho, José C., Pawlowski, Katharina, Manadas, Bruno, Pinto Ricardo, Cândido P., Ribeiro-Barros, Ana I.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/106206
https://doi.org/10.3390/ijms21010078
Resumo: Casuarina glauca displays high levels of salt tolerance, but very little is known about how this tree adapts to saline conditions. To understand the molecular basis of C. glauca response to salt stress, we have analyzed the proteome from branchlets of plants nodulated by nitrogen-fixing Frankia Thr bacteria (NOD+) and non-nodulated plants supplied with KNO3 (KNO3+), exposed to 0, 200, 400, and 600 mM NaCl. Proteins were identified by Short Gel, Long Gradient Liquid Chromatography coupled to Tandem Mass Spectrometry and quantified by Sequential Window Acquisition of All Theoretical Mass Spectra -Mass Spectrometry. 600 proteins were identified and 357 quantified. Differentially Expressed Proteins (DEPs) were multifunctional and mainly involved in Carbohydrate Metabolism, Cellular Processes, and Environmental Information Processing. The number of DEPs increased gradually with stress severity: (i) from 7 (200 mM NaCl) to 40 (600 mM NaCl) in KNO3+; and (ii) from 6 (200 mM NaCl) to 23 (600 mM NaCl) in NOD+. Protein-protein interaction analysis identified different interacting proteins involved in general metabolic pathways as well as in the biosynthesis of secondary metabolites with different response networks related to salt stress. Salt tolerance in C. glauca is related to a moderate impact on the photosynthetic machinery (one of the first and most important stress targets) as well as to an enhancement of the antioxidant status that maintains cellular homeostasis.
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spelling Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)actinorhizal plantsCasuarina glaucaFrankia; proteomicssalt stressFrankiaMagnoliopsidaMass SpectrometryPlant ProteinsProteomeProteomicsRoot Nodules, PlantSalinitySymbiosisSalt ToleranceCasuarina glauca displays high levels of salt tolerance, but very little is known about how this tree adapts to saline conditions. To understand the molecular basis of C. glauca response to salt stress, we have analyzed the proteome from branchlets of plants nodulated by nitrogen-fixing Frankia Thr bacteria (NOD+) and non-nodulated plants supplied with KNO3 (KNO3+), exposed to 0, 200, 400, and 600 mM NaCl. Proteins were identified by Short Gel, Long Gradient Liquid Chromatography coupled to Tandem Mass Spectrometry and quantified by Sequential Window Acquisition of All Theoretical Mass Spectra -Mass Spectrometry. 600 proteins were identified and 357 quantified. Differentially Expressed Proteins (DEPs) were multifunctional and mainly involved in Carbohydrate Metabolism, Cellular Processes, and Environmental Information Processing. The number of DEPs increased gradually with stress severity: (i) from 7 (200 mM NaCl) to 40 (600 mM NaCl) in KNO3+; and (ii) from 6 (200 mM NaCl) to 23 (600 mM NaCl) in NOD+. Protein-protein interaction analysis identified different interacting proteins involved in general metabolic pathways as well as in the biosynthesis of secondary metabolites with different response networks related to salt stress. Salt tolerance in C. glauca is related to a moderate impact on the photosynthetic machinery (one of the first and most important stress targets) as well as to an enhancement of the antioxidant status that maintains cellular homeostasis.This work was supported by the European Regional Development Fund (FEDER) through the COMPETE 2020—Operational Programme for Competitiveness and Internationalisation and Portuguese national funds via FCT—Fundação para a Ciência e a Tecnologia, I.P., under projects PTDC/AGR-FOR/4218/2012 (post-doctoral grant to IG; experimental assays and data analyses), POCI-01-0145-FEDER-031999, and the research units UID/AGR/04129/2019 (LEAF), UID/GEO/04035/2019 (GeoBioTec), and POCI-01-0145-FEDER-007440 (UID/NEU/04539/2013 CNC), and by The National Mass Spectrometry Network (RNEM) under the contract POCI-01-0145-FEDER-402-022125 (ref.: ROTEIRO/0028/2013) co-financed through the POPH program subsidized by the European Social Fund (infrastructures facilities, equipment, publication fees).MDPI2019-12-20info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/106206http://hdl.handle.net/10316/106206https://doi.org/10.3390/ijms21010078eng1422-0067Graça, InêsMendes, Vera M.Marques, IsabelDuro, Nunoda Costa, MárioRamalho, José C.Pawlowski, KatharinaManadas, BrunoPinto Ricardo, Cândido P.Ribeiro-Barros, Ana I.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-04-06T10:20:06Zoai:estudogeral.uc.pt:10316/106206Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:22:41.766540Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
title Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
spellingShingle Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
Graça, Inês
actinorhizal plants
Casuarina glauca
Frankia; proteomics
salt stress
Frankia
Magnoliopsida
Mass Spectrometry
Plant Proteins
Proteome
Proteomics
Root Nodules, Plant
Salinity
Symbiosis
Salt Tolerance
title_short Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
title_full Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
title_fullStr Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
title_full_unstemmed Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
title_sort Comparative Proteomic Analysis of Nodulated and Non-Nodulated Casuarina glauca Sieb. ex Spreng. Grown under Salinity Conditions Using Sequential Window Acquisition of All Theoretical Mass Spectra (SWATH-MS)
author Graça, Inês
author_facet Graça, Inês
Mendes, Vera M.
Marques, Isabel
Duro, Nuno
da Costa, Mário
Ramalho, José C.
Pawlowski, Katharina
Manadas, Bruno
Pinto Ricardo, Cândido P.
Ribeiro-Barros, Ana I.
author_role author
author2 Mendes, Vera M.
Marques, Isabel
Duro, Nuno
da Costa, Mário
Ramalho, José C.
Pawlowski, Katharina
Manadas, Bruno
Pinto Ricardo, Cândido P.
Ribeiro-Barros, Ana I.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Graça, Inês
Mendes, Vera M.
Marques, Isabel
Duro, Nuno
da Costa, Mário
Ramalho, José C.
Pawlowski, Katharina
Manadas, Bruno
Pinto Ricardo, Cândido P.
Ribeiro-Barros, Ana I.
dc.subject.por.fl_str_mv actinorhizal plants
Casuarina glauca
Frankia; proteomics
salt stress
Frankia
Magnoliopsida
Mass Spectrometry
Plant Proteins
Proteome
Proteomics
Root Nodules, Plant
Salinity
Symbiosis
Salt Tolerance
topic actinorhizal plants
Casuarina glauca
Frankia; proteomics
salt stress
Frankia
Magnoliopsida
Mass Spectrometry
Plant Proteins
Proteome
Proteomics
Root Nodules, Plant
Salinity
Symbiosis
Salt Tolerance
description Casuarina glauca displays high levels of salt tolerance, but very little is known about how this tree adapts to saline conditions. To understand the molecular basis of C. glauca response to salt stress, we have analyzed the proteome from branchlets of plants nodulated by nitrogen-fixing Frankia Thr bacteria (NOD+) and non-nodulated plants supplied with KNO3 (KNO3+), exposed to 0, 200, 400, and 600 mM NaCl. Proteins were identified by Short Gel, Long Gradient Liquid Chromatography coupled to Tandem Mass Spectrometry and quantified by Sequential Window Acquisition of All Theoretical Mass Spectra -Mass Spectrometry. 600 proteins were identified and 357 quantified. Differentially Expressed Proteins (DEPs) were multifunctional and mainly involved in Carbohydrate Metabolism, Cellular Processes, and Environmental Information Processing. The number of DEPs increased gradually with stress severity: (i) from 7 (200 mM NaCl) to 40 (600 mM NaCl) in KNO3+; and (ii) from 6 (200 mM NaCl) to 23 (600 mM NaCl) in NOD+. Protein-protein interaction analysis identified different interacting proteins involved in general metabolic pathways as well as in the biosynthesis of secondary metabolites with different response networks related to salt stress. Salt tolerance in C. glauca is related to a moderate impact on the photosynthetic machinery (one of the first and most important stress targets) as well as to an enhancement of the antioxidant status that maintains cellular homeostasis.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-20
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/106206
http://hdl.handle.net/10316/106206
https://doi.org/10.3390/ijms21010078
url http://hdl.handle.net/10316/106206
https://doi.org/10.3390/ijms21010078
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