Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters

Detalhes bibliográficos
Autor(a) principal: Cancado, Andre L. F.
Data de Publicação: 2010
Outros Autores: Duarte, Anderson R., Duczmal, Luiz H., Ferreira, Sabino J., Fonseca, Carlos M., Gontijo, Eliane C. D. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/11883
Resumo: Background: Irregularly shaped spatial clusters are difficult to delineate. A cluster found by an algorithm often spreads through large portions of the map, impacting its geographical meaning. Penalized likelihood methods for Kulldorff's spatial scan statistics have been used to control the excessive freedom of the shape of clusters. Penalty functions based on cluster geometry and non-connectivity have been proposed recently. Another approach involves the use of a multi-objective algorithm to maximize two objectives: the spatial scan statistics and the geometric penalty function. Results & Discussion: We present a novel scan statistic algorithm employing a function based on the graph topology to penalize the presence of under-populated disconnection nodes in candidate clusters, the disconnection nodes cohesion function. A disconnection node is defined as a region within a cluster, such that its removal disconnects the cluster. By applying this function, the most geographically meaningful clusters are sifted through the immense set of possible irregularly shaped candidate cluster solutions. To evaluate the statistical significance of solutions for multi-objective scans, a statistical approach based on the concept of attainment function is used. In this paper we compared different penalized likelihoods employing the geometric and non-connectivity regularity functions and the novel disconnection nodes cohesion function. We also build multi-objective scans using those three functions and compare them with the previous penalized likelihood scans. An application is presented using comprehensive state-wide data for Chagas' disease in puerperal women in Minas Gerais state, Brazil. Conclusions: We show that, compared to the other single-objective algorithms, multi-objective scans present better performance, regarding power, sensitivity and positive predicted value. The multi-objective non-connectivity scan is faster and better suited for the detection of moderately irregularly shaped clusters. The multi-objective cohesion scan is most effective for the detection of highly irregularly shaped clusters.
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spelling Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clustersShaped Disease ClustersHotspot DetectionAttainment FunctionGenetic AlgorithmStatisticsSurveillanceOptimizationPerformanceOptimizersTestsBackground: Irregularly shaped spatial clusters are difficult to delineate. A cluster found by an algorithm often spreads through large portions of the map, impacting its geographical meaning. Penalized likelihood methods for Kulldorff's spatial scan statistics have been used to control the excessive freedom of the shape of clusters. Penalty functions based on cluster geometry and non-connectivity have been proposed recently. Another approach involves the use of a multi-objective algorithm to maximize two objectives: the spatial scan statistics and the geometric penalty function. Results & Discussion: We present a novel scan statistic algorithm employing a function based on the graph topology to penalize the presence of under-populated disconnection nodes in candidate clusters, the disconnection nodes cohesion function. A disconnection node is defined as a region within a cluster, such that its removal disconnects the cluster. By applying this function, the most geographically meaningful clusters are sifted through the immense set of possible irregularly shaped candidate cluster solutions. To evaluate the statistical significance of solutions for multi-objective scans, a statistical approach based on the concept of attainment function is used. In this paper we compared different penalized likelihoods employing the geometric and non-connectivity regularity functions and the novel disconnection nodes cohesion function. We also build multi-objective scans using those three functions and compare them with the previous penalized likelihood scans. An application is presented using comprehensive state-wide data for Chagas' disease in puerperal women in Minas Gerais state, Brazil. Conclusions: We show that, compared to the other single-objective algorithms, multi-objective scans present better performance, regarding power, sensitivity and positive predicted value. The multi-objective non-connectivity scan is faster and better suited for the detection of moderately irregularly shaped clusters. The multi-objective cohesion scan is most effective for the detection of highly irregularly shaped clusters.Biomed Central LtdSapientiaCancado, Andre L. F.Duarte, Anderson R.Duczmal, Luiz H.Ferreira, Sabino J.Fonseca, Carlos M.Gontijo, Eliane C. D. M.2018-12-07T14:58:09Z2010-102010-10-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/11883eng1476-072X10.1186/1476-072X-9-55info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:23:46Zoai:sapientia.ualg.pt:10400.1/11883Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:03:19.487757Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
title Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
spellingShingle Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
Cancado, Andre L. F.
Shaped Disease Clusters
Hotspot Detection
Attainment Function
Genetic Algorithm
Statistics
Surveillance
Optimization
Performance
Optimizers
Tests
title_short Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
title_full Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
title_fullStr Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
title_full_unstemmed Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
title_sort Penalized likelihood and multi-objective spatial scans for the detection and inference of irregular clusters
author Cancado, Andre L. F.
author_facet Cancado, Andre L. F.
Duarte, Anderson R.
Duczmal, Luiz H.
Ferreira, Sabino J.
Fonseca, Carlos M.
Gontijo, Eliane C. D. M.
author_role author
author2 Duarte, Anderson R.
Duczmal, Luiz H.
Ferreira, Sabino J.
Fonseca, Carlos M.
Gontijo, Eliane C. D. M.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Cancado, Andre L. F.
Duarte, Anderson R.
Duczmal, Luiz H.
Ferreira, Sabino J.
Fonseca, Carlos M.
Gontijo, Eliane C. D. M.
dc.subject.por.fl_str_mv Shaped Disease Clusters
Hotspot Detection
Attainment Function
Genetic Algorithm
Statistics
Surveillance
Optimization
Performance
Optimizers
Tests
topic Shaped Disease Clusters
Hotspot Detection
Attainment Function
Genetic Algorithm
Statistics
Surveillance
Optimization
Performance
Optimizers
Tests
description Background: Irregularly shaped spatial clusters are difficult to delineate. A cluster found by an algorithm often spreads through large portions of the map, impacting its geographical meaning. Penalized likelihood methods for Kulldorff's spatial scan statistics have been used to control the excessive freedom of the shape of clusters. Penalty functions based on cluster geometry and non-connectivity have been proposed recently. Another approach involves the use of a multi-objective algorithm to maximize two objectives: the spatial scan statistics and the geometric penalty function. Results & Discussion: We present a novel scan statistic algorithm employing a function based on the graph topology to penalize the presence of under-populated disconnection nodes in candidate clusters, the disconnection nodes cohesion function. A disconnection node is defined as a region within a cluster, such that its removal disconnects the cluster. By applying this function, the most geographically meaningful clusters are sifted through the immense set of possible irregularly shaped candidate cluster solutions. To evaluate the statistical significance of solutions for multi-objective scans, a statistical approach based on the concept of attainment function is used. In this paper we compared different penalized likelihoods employing the geometric and non-connectivity regularity functions and the novel disconnection nodes cohesion function. We also build multi-objective scans using those three functions and compare them with the previous penalized likelihood scans. An application is presented using comprehensive state-wide data for Chagas' disease in puerperal women in Minas Gerais state, Brazil. Conclusions: We show that, compared to the other single-objective algorithms, multi-objective scans present better performance, regarding power, sensitivity and positive predicted value. The multi-objective non-connectivity scan is faster and better suited for the detection of moderately irregularly shaped clusters. The multi-objective cohesion scan is most effective for the detection of highly irregularly shaped clusters.
publishDate 2010
dc.date.none.fl_str_mv 2010-10
2010-10-01T00:00:00Z
2018-12-07T14:58:09Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/11883
url http://hdl.handle.net/10400.1/11883
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1476-072X
10.1186/1476-072X-9-55
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Biomed Central Ltd
publisher.none.fl_str_mv Biomed Central Ltd
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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