Data standardization of plant–pollinator interactions
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Publication Date: | 2022 |
Other Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article |
Language: | eng |
Source: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Download full: | http://hdl.handle.net/10451/55758 |
Summary: | Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms |
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Data standardization of plant–pollinator interactionsBackground: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of termsOxford University PressRepositório da Universidade de LisboaSalim, José ASaraiva, Antonio MZermoglio, Paula FAgostini, KaynaWolowski, MarinaDrucker, Debora PSoares, Filipi MBergamo, Pedro JVarassin, Isabela GFreitas, LeandroMaués, Márcia MRech, Andre RVeiga, Allan KAcosta, Andre LAraujo, Andréa CNogueira, AnselmoBlochtein, BetinaFreitas, Breno MAlbertini, Bruno CMaia-Silva, CamilaNunes, Carlos E PPires, Carmen S Sdos Santos, Charles FQueiroz, Elisa PCartolano, Etienne Ade Oliveira, Favízia FAmorim, Felipe WFontúrbel, Francisco Eda Silva, Gleycon VConsolaro, HélderAlves-dos-Santos, IsabelMachado, Isabel CSilva, Juliana SAleixo, Kátia PCarvalheiro, LuisaRocca, Márcia APinheiro, MardioreHrncir, MichaelStreher, Nathália SFerreira, Patricia Ade Albuquerque, Patricia M CMaruyama, Pietro KBorges, Rafael CGiannini, Tereza CBrito, Vinícius L G2023-01-09T18:41:09Z2022-052022-05-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/55758engSalim JA, Saraiva AM, Zermoglio PF, Agostini K, Wolowski M, Drucker DP, Soares FM, Bergamo PJ, Varassin IG, Freitas L, Maués MM, Rech AR, Veiga AK, Acosta AL, Araujo AC, Nogueira A, Blochtein B, Freitas BM, Albertini BC, Maia-Silva C, Nunes CEP, Pires CSS, Dos Santos CF, Queiroz EP, Cartolano EA, de Oliveira FF, Amorim FW, Fontúrbel FE, da Silva GV, Consolaro H, Alves-Dos-Santos I, Machado IC, Silva JS, Aleixo KP, Carvalheiro LG, Rocca MA, Pinheiro M, Hrncir M, Streher NS, Ferreira PA, de Albuquerque PMC, Maruyama PK, Borges RC, Giannini TC, Brito VLG. Data standardization of plant-pollinator interactions. Gigascience. 2022 May 26;11:giac043. doi: 10.1093/gigascience/giac043. PMID: 35639882; PMCID: PMC9154084.10.1093/gigascience/giac043info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T17:02:54Zoai:repositorio.ul.pt:10451/55758Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:06:20.731353Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Data standardization of plant–pollinator interactions |
title |
Data standardization of plant–pollinator interactions |
spellingShingle |
Data standardization of plant–pollinator interactions Salim, José A |
title_short |
Data standardization of plant–pollinator interactions |
title_full |
Data standardization of plant–pollinator interactions |
title_fullStr |
Data standardization of plant–pollinator interactions |
title_full_unstemmed |
Data standardization of plant–pollinator interactions |
title_sort |
Data standardization of plant–pollinator interactions |
author |
Salim, José A |
author_facet |
Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luisa Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G |
author_role |
author |
author2 |
Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luisa Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Repositório da Universidade de Lisboa |
dc.contributor.author.fl_str_mv |
Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luisa Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G |
description |
Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-05 2022-05-01T00:00:00Z 2023-01-09T18:41:09Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10451/55758 |
url |
http://hdl.handle.net/10451/55758 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Salim JA, Saraiva AM, Zermoglio PF, Agostini K, Wolowski M, Drucker DP, Soares FM, Bergamo PJ, Varassin IG, Freitas L, Maués MM, Rech AR, Veiga AK, Acosta AL, Araujo AC, Nogueira A, Blochtein B, Freitas BM, Albertini BC, Maia-Silva C, Nunes CEP, Pires CSS, Dos Santos CF, Queiroz EP, Cartolano EA, de Oliveira FF, Amorim FW, Fontúrbel FE, da Silva GV, Consolaro H, Alves-Dos-Santos I, Machado IC, Silva JS, Aleixo KP, Carvalheiro LG, Rocca MA, Pinheiro M, Hrncir M, Streher NS, Ferreira PA, de Albuquerque PMC, Maruyama PK, Borges RC, Giannini TC, Brito VLG. Data standardization of plant-pollinator interactions. Gigascience. 2022 May 26;11:giac043. doi: 10.1093/gigascience/giac043. PMID: 35639882; PMCID: PMC9154084. 10.1093/gigascience/giac043 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
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openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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