Data standardization of plant-pollinator interactions
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1093/gigascience/giac043 http://hdl.handle.net/11449/240176 |
Resumo: | BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. |
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Data standardization of plant-pollinator interactionsbiodiversity informaticsbiodiversity informationDarwin Corepollinationpollinatorvocabulary of termsBACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms.Consejo Nacional de Investigaciones Científicas y TécnicasNatural Environment Research CouncilConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Escola Politécnica Universidade de São PauloDepartamento de Ecología Genética y Evolución Instituto IEGEBA (CONICET-UBA) Facultad de Ciencias Exactas y Naturales Universidad de Buenos AiresDepartamento de Ciências da Natureza Matemática e Educação Universidade Federal de São Carlos, Rodovia Anhanguera km 174Caixa Postal 153. 13600-970Instituto de Ciências da Natureza Universidade Federal de Alfenas, Rua Gabriel Monteiro da Silva 700Embrapa Agricultura Digital Empresa Brasileira de Pesquisa Agropecuária (Embrapa)Jardim Botânico do Rio de Janeiro, R. Pacheco Leão 915Departamento de Botânica Universidade Federal do ParanáLaboratório de Entomologia Embrapa Amazônia Oriental, Trav. Dr. Enéas Pinheiro ,Bairro do MarcoFaculdade Interdisciplinar de Humanidades Centro Multiusuário de Pesquisa em Ciência Florestal (MULTIFLOR) Universidade Federal dos Vales do Jequitinhonha e MucuriInstituto de Biociências Universidade Federal de Mato Grosso do SulLaboratório de Interações Plant-Animal (LIPA), Centro de Ciências Naturais e Humanas (CCNH), Universidade Federal do ABC, Alameda da Universidade, s/nº, Anchieta, São Bernardo do Campo, São Paulo, BrazilEscola de Ciências da Saúde e da Vida Pontifícia Universidade Católica do Rio Grande do Sul RSDepartamento de Zootecnia Campus Universitário do Pici Universidade Federal do Ceará Centro de Ciências Agrárias CEDepartamento de Biociências, Universidade Federal Rural do Semi-Árido, Av. Francisco Mota, n° 572, Presidente Costa e Silva, Mossoró, RN, 59625-900, BrazilDepartment of Biological and Environmental Sciences Cottrell Building University of StirlingEmbrapa Recursos Genéticos e BiotecnologiaDepartamento de Ecologia Instituto de Biociências Universidade de São PauloLaboratório de Bionomia Biogeografia e Sistemática de Insetos (BIOSIS) Instituto de Biologia (IBIO) Universidade Federal da BahiaLaboratório de Ecologia da Polinização e Interações (LEPI) Programa de Pós-graduação em Botânica Programa de Pós-graduação em Zoologia Instituto de Biociências Universidade Estadual PaulistaInstituto de Biología Pontificia Universidad Católica de Valparaíso, Facultad de CienciasManaus - AM, Programa de Pós-Graduação em Ecologia / INPA-V8 - Instituto Nacional de Pesquisas da Amazônia ,Av. André Araújo 2936Instituto de Biotecnologia Universidade Federal de CatalãoPrograma de Pós-Graduação em Biologia Vegetal Departamento de Botânica Universidade Federal de PernambucoInstituto Federal de Educação Ciência e Tecnologia de Mato Grosso Avenida Sen. Filinto Müller 953 -: 78043-400 - Cuiabá MTAssociação Brasileira de Estudos das Abelhas (A.B.E.L.H.A.)Departamento de Ecologia Universidade Federal de Goiás Campus Samambaia Brazil Centre for Ecology Evolution and Environmental Changes (cE3c) University of LisboaDepartamento de Ecologia Centro de Ciências Biológicas e da Saúde Universidade Federal de Sergipe, Avenida Marechal Rondon s/nUniversidade Federal da Fronteira Sul, R. Major Antônio Cardoso 590, Cerro Largo, Rio Grande do Sul, 97900-000, BrazilDepartamento de Fisiologia, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 321, Travessa 14, São Paulo, São Paulo, 05508-900, BrazilDepartment of Biological Sciences University of Pittsburgh PAEnvironmental Sciences Department Federal University of São CarlosFederal University of Maranhão Dept. Biology Dom Delgado University Town MACentro de Síntese Ecológica e Conservação Departamento de Genética Ecologia e Evolução Instituto de Ciências Biológicas Universidade Federal de Minas GeraisInstituto de Biologia Universidade Federal de Uberlândia, Rua Ceará snLaboratório de Ecologia da Polinização e Interações (LEPI) Programa de Pós-graduação em Botânica Programa de Pós-graduação em Zoologia Instituto de Biociências Universidade Estadual PaulistaCNPq: 142028/2016-9FAPESP: 2019/27179-7Universidade de São Paulo (USP)Universidad de Buenos AiresUniversidade Federal de São Carlos (UFSCar)Universidade Federal de AlfenasEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Jardim Botânico do Rio de JaneiroUniversidade Federal do Paraná (UFPR)Universidade Federal dos Vales do Jequitinhonha e MucuriUniversidade Federal de Mato Grosso do Sul (UFMS)Universidade Federal do ABC (UFABC)RSCEUniversity of StirlingUniversidade Federal da Bahia (UFBA)Universidade Estadual Paulista (UNESP)Pontificia Universidad Católica de ValparaísoManaus - AMUniversidade Federal de CatalãoUniversidade Federal de Pernambuco (UFPE)MTAssociação Brasileira de Estudos das Abelhas (A.B.E.L.H.A.)Universidade Federal de Goiás (UFG)Universidade Federal de Sergipe (UFS)PAMAUniversidade Federal de Minas Gerais (UFMG)Universidade Federal de Uberlândia (UFU)Salim, José ASaraiva, Antonio M.Zermoglio, Paula F.Agostini, KaynaWolowski, MarinaDrucker, Debora P.Soares, Filipi M.Bergamo, Pedro J.Varassin, Isabela G.Freitas, LeandroMaués, Márcia MRech, Andre R.Veiga, Allan K.Acosta, Andre L.Araujo, Andréa CNogueira, AnselmoBlochtein, BetinaFreitas, Breno M.Albertini, Bruno C.Maia-Silva, CamilaNunes, Carlos E PPires, Carmen S SSantos, Charles F. dosQueiroz, Elisa P.Cartolano, Etienne A.Oliveira, Favízia F. deAmorim, Felipe W. [UNESP]Fontúrbel, Francisco E.Silva, Gleycon V. daConsolaro, HélderAlves-Dos-Santos, IsabelMachado, Isabel C.Silva, Juliana S.Aleixo, Kátia PCarvalheiro, Luísa GRocca, Márcia APinheiro, MardioreHrncir, MichaelStreher, Nathália SFerreira, Patricia A.Albuquerque, Patricia M. C. deMaruyama, Pietro K.Borges, Rafael C.Giannini, Tereza C.Brito, Vinícius L G2023-03-01T20:04:49Z2023-03-01T20:04:49Z2022-05-26info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1093/gigascience/giac043GigaScience, v. 11.2047-217Xhttp://hdl.handle.net/11449/24017610.1093/gigascience/giac0432-s2.0-85131214301Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGigaScienceinfo:eu-repo/semantics/openAccess2023-03-01T20:04:50Zoai:repositorio.unesp.br:11449/240176Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-03-01T20:04:50Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Data standardization of plant-pollinator interactions |
title |
Data standardization of plant-pollinator interactions |
spellingShingle |
Data standardization of plant-pollinator interactions Salim, José A biodiversity informatics biodiversity information Darwin Core pollination pollinator vocabulary of terms |
title_short |
Data standardization of plant-pollinator interactions |
title_full |
Data standardization of plant-pollinator interactions |
title_fullStr |
Data standardization of plant-pollinator interactions |
title_full_unstemmed |
Data standardization of plant-pollinator interactions |
title_sort |
Data standardization of plant-pollinator interactions |
author |
Salim, José A |
author_facet |
Salim, José A Saraiva, Antonio M. Zermoglio, Paula F. Agostini, Kayna Wolowski, Marina Drucker, Debora P. Soares, Filipi M. Bergamo, Pedro J. Varassin, Isabela G. Freitas, Leandro Maués, Márcia M Rech, Andre R. Veiga, Allan K. Acosta, Andre L. Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M. Albertini, Bruno C. Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S Santos, Charles F. dos Queiroz, Elisa P. Cartolano, Etienne A. Oliveira, Favízia F. de Amorim, Felipe W. [UNESP] Fontúrbel, Francisco E. Silva, Gleycon V. da Consolaro, Hélder Alves-Dos-Santos, Isabel Machado, Isabel C. Silva, Juliana S. Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A. Albuquerque, Patricia M. C. de Maruyama, Pietro K. Borges, Rafael C. Giannini, Tereza C. Brito, Vinícius L G |
author_role |
author |
author2 |
Saraiva, Antonio M. Zermoglio, Paula F. Agostini, Kayna Wolowski, Marina Drucker, Debora P. Soares, Filipi M. Bergamo, Pedro J. Varassin, Isabela G. Freitas, Leandro Maués, Márcia M Rech, Andre R. Veiga, Allan K. Acosta, Andre L. Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M. Albertini, Bruno C. Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S Santos, Charles F. dos Queiroz, Elisa P. Cartolano, Etienne A. Oliveira, Favízia F. de Amorim, Felipe W. [UNESP] Fontúrbel, Francisco E. Silva, Gleycon V. da Consolaro, Hélder Alves-Dos-Santos, Isabel Machado, Isabel C. Silva, Juliana S. Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A. Albuquerque, Patricia M. C. de Maruyama, Pietro K. Borges, Rafael C. Giannini, Tereza C. Brito, Vinícius L G |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Universidad de Buenos Aires Universidade Federal de São Carlos (UFSCar) Universidade Federal de Alfenas Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Jardim Botânico do Rio de Janeiro Universidade Federal do Paraná (UFPR) Universidade Federal dos Vales do Jequitinhonha e Mucuri Universidade Federal de Mato Grosso do Sul (UFMS) Universidade Federal do ABC (UFABC) RS CE University of Stirling Universidade Federal da Bahia (UFBA) Universidade Estadual Paulista (UNESP) Pontificia Universidad Católica de Valparaíso Manaus - AM Universidade Federal de Catalão Universidade Federal de Pernambuco (UFPE) MT Associação Brasileira de Estudos das Abelhas (A.B.E.L.H.A.) Universidade Federal de Goiás (UFG) Universidade Federal de Sergipe (UFS) PA MA Universidade Federal de Minas Gerais (UFMG) Universidade Federal de Uberlândia (UFU) |
dc.contributor.author.fl_str_mv |
Salim, José A Saraiva, Antonio M. Zermoglio, Paula F. Agostini, Kayna Wolowski, Marina Drucker, Debora P. Soares, Filipi M. Bergamo, Pedro J. Varassin, Isabela G. Freitas, Leandro Maués, Márcia M Rech, Andre R. Veiga, Allan K. Acosta, Andre L. Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M. Albertini, Bruno C. Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S Santos, Charles F. dos Queiroz, Elisa P. Cartolano, Etienne A. Oliveira, Favízia F. de Amorim, Felipe W. [UNESP] Fontúrbel, Francisco E. Silva, Gleycon V. da Consolaro, Hélder Alves-Dos-Santos, Isabel Machado, Isabel C. Silva, Juliana S. Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A. Albuquerque, Patricia M. C. de Maruyama, Pietro K. Borges, Rafael C. Giannini, Tereza C. Brito, Vinícius L G |
dc.subject.por.fl_str_mv |
biodiversity informatics biodiversity information Darwin Core pollination pollinator vocabulary of terms |
topic |
biodiversity informatics biodiversity information Darwin Core pollination pollinator vocabulary of terms |
description |
BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-05-26 2023-03-01T20:04:49Z 2023-03-01T20:04:49Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1093/gigascience/giac043 GigaScience, v. 11. 2047-217X http://hdl.handle.net/11449/240176 10.1093/gigascience/giac043 2-s2.0-85131214301 |
url |
http://dx.doi.org/10.1093/gigascience/giac043 http://hdl.handle.net/11449/240176 |
identifier_str_mv |
GigaScience, v. 11. 2047-217X 10.1093/gigascience/giac043 2-s2.0-85131214301 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
GigaScience |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1799965057302396928 |