Data standardization of plant-pollinator interactions
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1093/gigascience/giac043 http://hdl.handle.net/11449/237779 |
Resumo: | Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. |
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Data standardization of plant-pollinator interactionsbiodiversity informationDarwin Corevocabulary of termspollinationpollinatorbiodiversity informaticsBackground: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Univ Sao Paulo, Escola Politecn, BR-05508010 Sao Paulo, SP, BrazilUniv Buenos Aires, Fac Ciencias Exactas & Nat, Inst IEGEBA CONICET UBA, Dept Ecol Genet & Evoluc, Buenos Aires, DF, ArgentinaUniv Fed Sao Carlos, Dept Ciencias Nat Matemat & Educ, Rodovia Anhanguera Km 174,Caixa Postal 153, BR-13600970 Sao Paulo, BrazilUniv Fed Alfenas, Inst Ciencias Nat, Rua Gabriel Monteiro da Silva 700, BR-37130001 Alfenas, MG, BrazilEmpresa Brasileira Pesquisa Agr Embrapa, Embrapa Agr Digital, Campinas, SP, BrazilInst Pesquisas Jardim Bot Rio de Janeiro, R Pacheco Leao 915, BR-22460030 Rio De Janeiro, RJ, BrazilUniv Fed Parana, Dept Bot, Curitiba, Parana, BrazilEmbrapa Amazonia Oriental, Lab Entomol, Trav Dr Eneas Pinheiro S-N, BR-66095903 Belem, Para, BrazilUniv Fed Vales Jequitinhonha & Mucuri, Fac Interdisciplinar Humanidades, Ctr Multiusuario Pesquisa Ciencia Florestal MULTI, BR-39100000 Diamantina, MG, BrazilInst Tecnol, Rua Boaventura da Silva 955, BR-66055900 Belem, Para, BrazilUniv Fed Mato Grosso do Sul, Inst Biociencias, Campo Grande, MS, BrazilUniv Fed ABC, Ctr Ciencias Nat & Humanas CCNH, Lab Interacoes Plant Anim LIPA, Alameda Univ S-N, Sao Bernardo Do Campo, SP, BrazilPontificia Univ Catolica Rio Grande do Sul, Escola Ciencias Saude Vida, BR-90619900 Porto Alegre, RS, BrazilUniv Sao Paulo, Inst Biociencias, Dept Ecol, Sao Paulo, BrazilUniv Fed Ceara, Ctr Ciencias Agr, Dept Zootecnia, Campus Univ Pici, Fortaleza, Ceara, BrazilUniv Fed Rural Semi Arido, Dept Biociencias, Av Francisco Mote 572, BR-59625900 Mossoro, RN, BrazilUniv Stirling, Dept Biol & Environm Sci, Cottrell Bldg, Stirling FK9 4LA, ScotlandEmbrapa Recursos Genet & Biotecnol, Brasilia, DF, BrazilUniv Fed Bahia, Inst Biol IBIO, Lab Bion Biogeog & Sistemat Insetos BIOSIS, BR-40170115 Salvador, BA, BrazilUniv Estadual Paulista, Inst Biociencias, Lab Ecol Polinizacao & Interacoes LEPI, Programa Posgrad Zool,Programa Posgrad Bot, Botucatu, SP, BrazilPontificia Univ Catolica Valparaiso, Fac Ciencias, Inst Biol, Valparaiso, ChileInst Nacl de Pesquisas da Amazonia, Programa Posgrad Ecol INPA V8, Av Andre Araujo 2936, BR-69067375 Manaus, Amazonas, BrazilUniv Fed Catalao, Inst Biotecnol, Catalao, Go, BrazilUniv Fed Pernambuco, Dept Bot, Programa Posgrad Biol Vegetal, BR-50670901 Recife, PE, BrazilInst Fed Educ Ciencia & Tecnol Mato Grosso, Ave Sen Filinto Muller 953, BR-78043400 Cuiaba, MT, BrazilAssoc Brasileira Estudos Abelhas ABELHA, BR-04535001 Sao Paulo, SP, BrazilUniv Fed Goias, Dept Ecol, Campus Samambaia, Goiania, Go, BrazilUniv Lisbon, Ctr Ecol Evolut & Environm Changes cE3c, Lisbon, PortugalUniv Fed Sergipe, Ctr Ciencias Biol & Saude, Dept Ecol, Ave Marechal Rondon S-N, BR-49100000 Sao Cristovao, Sergipe, BrazilUniv Fed Fronteira Sul, R Major Antonio Cardoso 590, BR-97900000 Cerro Largo, RS, BrazilUniv Sao Paulo, Inst Biociencias, Dept Fisiol, Rua Matao 321,Travessa 14, BR-05508900 Sao Paulo, SP, BrazilUniv Pittsburgh, Dept Biol Sci, Pittsburgh, PA 15260 USAUniv Fed Sao Carlos, Environm Sci Dept, Sao Paulo, BrazilUniv Fed Maranhao, Dept Biol, Sao Luis, Maranhao, BrazilUniv Fed Minas Gerais, Dept Genet Ecol & Evolucao, Inst Ciencias Biol, Ctr Sintese Ecol & Conservacao, Belo Horizonte, MG, BrazilUniv Fed Uberlandia, Inst Biol, Rua Ceara Sn, BR-38405302 Uberlandia, MG, BrazilUniv Estadual Paulista, Inst Biociencias, Lab Ecol Polinizacao & Interacoes LEPI, Programa Posgrad Zool,Programa Posgrad Bot, Botucatu, SP, BrazilFAPESP: FAPESP:2018/14994-1Oxford Univ PressUniversidade de São Paulo (USP)Univ Buenos AiresUniversidade Federal de São Carlos (UFSCar)Univ Fed AlfenasEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Inst Pesquisas Jardim Bot Rio de JaneiroUniv Fed ParanaUniversidade Federal de Viçosa (UFV)Inst TecnolUniversidade Federal de Mato Grosso do Sul (UFMS)Universidade Federal do ABC (UFABC)Pontificia Univ Catolica Rio Grande do SulUniv Fed CearaUniv Fed Rural Semi AridoUniv StirlingUniversidade Federal da Bahia (UFBA)Universidade Estadual Paulista (UNESP)Pontificia Univ Catolica ValparaisoInst Nacl de Pesquisas da AmazoniaUniv Fed CatalaoUniversidade Federal de Pernambuco (UFPE)Inst Fed Educ Ciencia & Tecnol Mato GrossoAssoc Brasileira Estudos Abelhas ABELHAUniversidade Federal de Goiás (UFG)Univ LisbonUniversidade Federal de Sergipe (UFS)Univ Fed Fronteira SulUniv PittsburghUniv Fed MaranhaoUniversidade Federal de Minas Gerais (UFMG)Universidade Federal de Uberlândia (UFU)Salim, Jose A.Saraiva, Antonio M.Zermoglio, Paula F.Agostini, KaynaWolowski, MarinaDrucker, Debora P.Soares, Filipi M.Bergamo, Pedro J.Varassin, Isabela G.Freitas, LeandroMaues, Marcia M.Rech, Andre R.Veiga, Allan K.Acosta, Andre L.Araujo, Andrea C.Nogueira, AnselmoBlochtein, BetinaFreitas, Breno M.Albertini, Bruno C.Maia-Silva, CamilaNunes, Carlos E. P.Pires, Carmen S. S.Santos, Charles F. dosQueiroz, Elisa P.Cartolano, Etienne A.Oliveira, Favizia F. deAmorim, Felipe W. [UNESP]Fonturbel, Francisco E.Silva, Gleycon daConsolaro, HelderAlves-dos-Santos, IsabelMachado, Isabel C.Silva, Juliana S.Aleixo, Katia P.Carvalheiro, Luisa G.Rocca, Marcia A.Pinheiro, MardioreHrncir, MichaelStreher, Nathalia S.Ferreira, Patricia A.Albuquerque, Patricia M. C. deMaruyama, Pietro K.Borges, Rafael C.Giannini, Tereza C.Brito, Vinicius L. G.2022-11-30T13:44:44Z2022-11-30T13:44:44Z2022-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article15http://dx.doi.org/10.1093/gigascience/giac043Gigascience. Oxford: Oxford Univ Press, v. 11, 15 p., 2022.2047-217Xhttp://hdl.handle.net/11449/23777910.1093/gigascience/giac043WOS:000821864000057Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGigascienceinfo:eu-repo/semantics/openAccess2022-11-30T13:44:46Zoai:repositorio.unesp.br:11449/237779Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-11-30T13:44:46Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Data standardization of plant-pollinator interactions |
title |
Data standardization of plant-pollinator interactions |
spellingShingle |
Data standardization of plant-pollinator interactions Salim, Jose A. biodiversity information Darwin Core vocabulary of terms pollination pollinator biodiversity informatics |
title_short |
Data standardization of plant-pollinator interactions |
title_full |
Data standardization of plant-pollinator interactions |
title_fullStr |
Data standardization of plant-pollinator interactions |
title_full_unstemmed |
Data standardization of plant-pollinator interactions |
title_sort |
Data standardization of plant-pollinator interactions |
author |
Salim, Jose A. |
author_facet |
Salim, Jose A. Saraiva, Antonio M. Zermoglio, Paula F. Agostini, Kayna Wolowski, Marina Drucker, Debora P. Soares, Filipi M. Bergamo, Pedro J. Varassin, Isabela G. Freitas, Leandro Maues, Marcia M. Rech, Andre R. Veiga, Allan K. Acosta, Andre L. Araujo, Andrea C. Nogueira, Anselmo Blochtein, Betina Freitas, Breno M. Albertini, Bruno C. Maia-Silva, Camila Nunes, Carlos E. P. Pires, Carmen S. S. Santos, Charles F. dos Queiroz, Elisa P. Cartolano, Etienne A. Oliveira, Favizia F. de Amorim, Felipe W. [UNESP] Fonturbel, Francisco E. Silva, Gleycon da Consolaro, Helder Alves-dos-Santos, Isabel Machado, Isabel C. Silva, Juliana S. Aleixo, Katia P. Carvalheiro, Luisa G. Rocca, Marcia A. Pinheiro, Mardiore Hrncir, Michael Streher, Nathalia S. Ferreira, Patricia A. Albuquerque, Patricia M. C. de Maruyama, Pietro K. Borges, Rafael C. Giannini, Tereza C. Brito, Vinicius L. G. |
author_role |
author |
author2 |
Saraiva, Antonio M. Zermoglio, Paula F. Agostini, Kayna Wolowski, Marina Drucker, Debora P. Soares, Filipi M. Bergamo, Pedro J. Varassin, Isabela G. Freitas, Leandro Maues, Marcia M. Rech, Andre R. Veiga, Allan K. Acosta, Andre L. Araujo, Andrea C. Nogueira, Anselmo Blochtein, Betina Freitas, Breno M. Albertini, Bruno C. Maia-Silva, Camila Nunes, Carlos E. P. Pires, Carmen S. S. Santos, Charles F. dos Queiroz, Elisa P. Cartolano, Etienne A. Oliveira, Favizia F. de Amorim, Felipe W. [UNESP] Fonturbel, Francisco E. Silva, Gleycon da Consolaro, Helder Alves-dos-Santos, Isabel Machado, Isabel C. Silva, Juliana S. Aleixo, Katia P. Carvalheiro, Luisa G. Rocca, Marcia A. Pinheiro, Mardiore Hrncir, Michael Streher, Nathalia S. Ferreira, Patricia A. Albuquerque, Patricia M. C. de Maruyama, Pietro K. Borges, Rafael C. Giannini, Tereza C. Brito, Vinicius L. G. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Univ Buenos Aires Universidade Federal de São Carlos (UFSCar) Univ Fed Alfenas Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Inst Pesquisas Jardim Bot Rio de Janeiro Univ Fed Parana Universidade Federal de Viçosa (UFV) Inst Tecnol Universidade Federal de Mato Grosso do Sul (UFMS) Universidade Federal do ABC (UFABC) Pontificia Univ Catolica Rio Grande do Sul Univ Fed Ceara Univ Fed Rural Semi Arido Univ Stirling Universidade Federal da Bahia (UFBA) Universidade Estadual Paulista (UNESP) Pontificia Univ Catolica Valparaiso Inst Nacl de Pesquisas da Amazonia Univ Fed Catalao Universidade Federal de Pernambuco (UFPE) Inst Fed Educ Ciencia & Tecnol Mato Grosso Assoc Brasileira Estudos Abelhas ABELHA Universidade Federal de Goiás (UFG) Univ Lisbon Universidade Federal de Sergipe (UFS) Univ Fed Fronteira Sul Univ Pittsburgh Univ Fed Maranhao Universidade Federal de Minas Gerais (UFMG) Universidade Federal de Uberlândia (UFU) |
dc.contributor.author.fl_str_mv |
Salim, Jose A. Saraiva, Antonio M. Zermoglio, Paula F. Agostini, Kayna Wolowski, Marina Drucker, Debora P. Soares, Filipi M. Bergamo, Pedro J. Varassin, Isabela G. Freitas, Leandro Maues, Marcia M. Rech, Andre R. Veiga, Allan K. Acosta, Andre L. Araujo, Andrea C. Nogueira, Anselmo Blochtein, Betina Freitas, Breno M. Albertini, Bruno C. Maia-Silva, Camila Nunes, Carlos E. P. Pires, Carmen S. S. Santos, Charles F. dos Queiroz, Elisa P. Cartolano, Etienne A. Oliveira, Favizia F. de Amorim, Felipe W. [UNESP] Fonturbel, Francisco E. Silva, Gleycon da Consolaro, Helder Alves-dos-Santos, Isabel Machado, Isabel C. Silva, Juliana S. Aleixo, Katia P. Carvalheiro, Luisa G. Rocca, Marcia A. Pinheiro, Mardiore Hrncir, Michael Streher, Nathalia S. Ferreira, Patricia A. Albuquerque, Patricia M. C. de Maruyama, Pietro K. Borges, Rafael C. Giannini, Tereza C. Brito, Vinicius L. G. |
dc.subject.por.fl_str_mv |
biodiversity information Darwin Core vocabulary of terms pollination pollinator biodiversity informatics |
topic |
biodiversity information Darwin Core vocabulary of terms pollination pollinator biodiversity informatics |
description |
Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-11-30T13:44:44Z 2022-11-30T13:44:44Z 2022-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1093/gigascience/giac043 Gigascience. Oxford: Oxford Univ Press, v. 11, 15 p., 2022. 2047-217X http://hdl.handle.net/11449/237779 10.1093/gigascience/giac043 WOS:000821864000057 |
url |
http://dx.doi.org/10.1093/gigascience/giac043 http://hdl.handle.net/11449/237779 |
identifier_str_mv |
Gigascience. Oxford: Oxford Univ Press, v. 11, 15 p., 2022. 2047-217X 10.1093/gigascience/giac043 WOS:000821864000057 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Gigascience |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
15 |
dc.publisher.none.fl_str_mv |
Oxford Univ Press |
publisher.none.fl_str_mv |
Oxford Univ Press |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1799965379277094912 |