Modeling the influence of formalin fixation time on the elemental constitution of human tissues
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Tipo de documento: | Dissertação |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10362/152019 |
Resumo: | Cancer is a leading cause of death worldwide, accounting for nearly 9.6 million deaths. Therefore, an early and accurate diagnosis is essential. Trace elements are essential and are linked with toxicity when they exist in abnormal quantities. Thus, understanding the mechanisms of assimilation/accumulation of trace elements may be indicative of the genesis or progression of certain diseases, such as carcinogenesis. X-rays have been employed in the medical system since its discovery, particularly for diagnostics and treatments. Micro Energy Dispersive X-ray Fluorescence (μEDXRF) is used as a multielement analysis technique of trace elements, once it measures non- destructively actual tissue levels of elements in very small portion of tissue, and it was the chosen one for this Master Thesis. Previous studies show that the formalin fixation time influences the elemental composition present on the tissue, focusing on the drastic decrease of K and Cl after 48 hours. In order to have an accurate quantification of this elements, we need to study the influence of formalin fixation time on tissues. In this work, 6 sets of muscle tissues, from Instituto Português de Oncologia (IPO), submitted to different fixation times in formalin were analyzed with the goal to param- eterize the influence of formalin fixation time on the elemental constitution of human tissues, focusing on 9 trace elements - K, Zn, Cl, P, S, Cu, Fe, Mn and Ca. The quantitative analysis was done using Certified Reference Materials (CRMs) to build elemental cali- bration curves. All the data was treated in different ways, namely with ROOT software - removing background and identifying each elemental peaks - and with the Compton-to- Rayleigh Ratio correction, in order to minimize errors and improve accuracy. Statistical tests, Shapiro-Wilk was performed to test the normality of the distributions of each ele- ment and Kruskal-Wallis ANOVA to compare the tissues with different fixation times. The results obtained, confirmed what it was expected, showing that the K and Cl concentrations dramatically decrease in the first 3 hours of formalin fixation time. |
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Modeling the influence of formalin fixation time on the elemental constitution of human tissuesCancerMuscleμEDXRFμXRFTrace ElementsCalibration CurvesDomínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e TecnologiasCancer is a leading cause of death worldwide, accounting for nearly 9.6 million deaths. Therefore, an early and accurate diagnosis is essential. Trace elements are essential and are linked with toxicity when they exist in abnormal quantities. Thus, understanding the mechanisms of assimilation/accumulation of trace elements may be indicative of the genesis or progression of certain diseases, such as carcinogenesis. X-rays have been employed in the medical system since its discovery, particularly for diagnostics and treatments. Micro Energy Dispersive X-ray Fluorescence (μEDXRF) is used as a multielement analysis technique of trace elements, once it measures non- destructively actual tissue levels of elements in very small portion of tissue, and it was the chosen one for this Master Thesis. Previous studies show that the formalin fixation time influences the elemental composition present on the tissue, focusing on the drastic decrease of K and Cl after 48 hours. In order to have an accurate quantification of this elements, we need to study the influence of formalin fixation time on tissues. In this work, 6 sets of muscle tissues, from Instituto Português de Oncologia (IPO), submitted to different fixation times in formalin were analyzed with the goal to param- eterize the influence of formalin fixation time on the elemental constitution of human tissues, focusing on 9 trace elements - K, Zn, Cl, P, S, Cu, Fe, Mn and Ca. The quantitative analysis was done using Certified Reference Materials (CRMs) to build elemental cali- bration curves. All the data was treated in different ways, namely with ROOT software - removing background and identifying each elemental peaks - and with the Compton-to- Rayleigh Ratio correction, in order to minimize errors and improve accuracy. Statistical tests, Shapiro-Wilk was performed to test the normality of the distributions of each ele- ment and Kruskal-Wallis ANOVA to compare the tissues with different fixation times. The results obtained, confirmed what it was expected, showing that the K and Cl concentrations dramatically decrease in the first 3 hours of formalin fixation time.O cancro é uma das principais causas de morte em todo o mundo, sendo responsável por quase 9,6 milhões de mortes. Portanto, um diagnóstico precoce e preciso é essencial. Os elementos traço são essenciais e estão ligados à toxicidade quando existem em quanti- dades anormais. Assim, a compreensão dos mecanismos de assimilação/acumulação de elementos traço pode ser um indicativo do aparecimento ou progressão de certas doenças, como a carcinogénese. Os raios-X têm sido usados no sistema médico desde sua descoberta, principalmente para diagnósticos e tratamentos. A μEDXRF é utilizada como técnica de análise multiele- mentar de elementos traço, uma vez que mede, de uma forma não destrutiva elementos numa porção muito pequena de tecido, e foi a técnica escolhida para esta Dissertação de Mestrado. Estudos anteriores mostram que o tempo de fixação em formol influencia a composição elementar presente no tecido, focando na diminuição drástica de K e Cl após 48 horas. Para uma quantificação precisa desses elementos, precisamos estudar a influência do tempo de fixação em formol nos tecidos. Neste trabalho, 6 conjuntos de tecidos musculares, do IPO, submetidos a diferentes tempos de fixação em formol foram analisados com o objetivo de parametrizar a influên- cia do tempo de fixação em formol na constituição elementar dos tecidos humanos, com foco em 9 elementos traço - K, Zn, Cl, P, S, Cu, Fe, Mn e Ca. A análise quantitativa foi feita utilizando CRMs para construir curvas de calibração elementares. Todos os dados foram tratados de diferentes formas, nomeadamente com software ROOT - removendo o fundo e identificando cada pico elementar - e com a correção Compton-to-Rayleigh Ratio, de forma a minimizar erros e melhorar a precisão. Foram usados testes estatísti- cos, nomeadamente o Shapiro-Wilk para testar a normalidade das distribuições de cada elemento e o Kruskal-Wallis ANOVA para comparar os tecidos com diferentes tempos de fixação. Os resultados confirmaram o esperado, mostrando que as concentrações de K e Cl dramaticamente nas primeiras 3 horas de fixação em formol.Moreno, AldaMachado, JorgeRUNSilva, João Carlos Tomás da2023-04-21T18:35:48Z2022-122022-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10362/152019enginfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T05:34:26Zoai:run.unl.pt:10362/152019Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:54:47.081600Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
title |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
spellingShingle |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues Silva, João Carlos Tomás da Cancer Muscle μEDXRF μXRF Trace Elements Calibration Curves Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias |
title_short |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
title_full |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
title_fullStr |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
title_full_unstemmed |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
title_sort |
Modeling the influence of formalin fixation time on the elemental constitution of human tissues |
author |
Silva, João Carlos Tomás da |
author_facet |
Silva, João Carlos Tomás da |
author_role |
author |
dc.contributor.none.fl_str_mv |
Moreno, Alda Machado, Jorge RUN |
dc.contributor.author.fl_str_mv |
Silva, João Carlos Tomás da |
dc.subject.por.fl_str_mv |
Cancer Muscle μEDXRF μXRF Trace Elements Calibration Curves Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias |
topic |
Cancer Muscle μEDXRF μXRF Trace Elements Calibration Curves Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias |
description |
Cancer is a leading cause of death worldwide, accounting for nearly 9.6 million deaths. Therefore, an early and accurate diagnosis is essential. Trace elements are essential and are linked with toxicity when they exist in abnormal quantities. Thus, understanding the mechanisms of assimilation/accumulation of trace elements may be indicative of the genesis or progression of certain diseases, such as carcinogenesis. X-rays have been employed in the medical system since its discovery, particularly for diagnostics and treatments. Micro Energy Dispersive X-ray Fluorescence (μEDXRF) is used as a multielement analysis technique of trace elements, once it measures non- destructively actual tissue levels of elements in very small portion of tissue, and it was the chosen one for this Master Thesis. Previous studies show that the formalin fixation time influences the elemental composition present on the tissue, focusing on the drastic decrease of K and Cl after 48 hours. In order to have an accurate quantification of this elements, we need to study the influence of formalin fixation time on tissues. In this work, 6 sets of muscle tissues, from Instituto Português de Oncologia (IPO), submitted to different fixation times in formalin were analyzed with the goal to param- eterize the influence of formalin fixation time on the elemental constitution of human tissues, focusing on 9 trace elements - K, Zn, Cl, P, S, Cu, Fe, Mn and Ca. The quantitative analysis was done using Certified Reference Materials (CRMs) to build elemental cali- bration curves. All the data was treated in different ways, namely with ROOT software - removing background and identifying each elemental peaks - and with the Compton-to- Rayleigh Ratio correction, in order to minimize errors and improve accuracy. Statistical tests, Shapiro-Wilk was performed to test the normality of the distributions of each ele- ment and Kruskal-Wallis ANOVA to compare the tissues with different fixation times. The results obtained, confirmed what it was expected, showing that the K and Cl concentrations dramatically decrease in the first 3 hours of formalin fixation time. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-12 2022-12-01T00:00:00Z 2023-04-21T18:35:48Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
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publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10362/152019 |
url |
http://hdl.handle.net/10362/152019 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
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info:eu-repo/semantics/openAccess |
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openAccess |
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application/pdf |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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