Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot

Detalhes bibliográficos
Autor(a) principal: Humbert, Magali
Data de Publicação: 2020
Outros Autores: Morán, María, de la Cruz-Ojeda, Patricia, Muntané, Jordi, Wiedmer, Tabea, Apostolova, Nadezda, McKenna, Sharon L., Velasco, Guillermo, Balduini, Walter, Eckhart, Leopold, Janji, Bassam, Marques, Maria Belém Sousa Sampaio, Ludovico, Paula, Žerovnik, Eva, Langer, Rupert, Perren, Aurel, Engedal, Nikolai, Tschan, Mario P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/64832
Resumo: Autophagy is a highly conserved degradation mechanism that is essential for maintaining cellular homeostasis. In human disease, autophagy pathways are frequently deregulated and there is immense interest in targeting autophagy for therapeutic approaches. Accordingly, there is a need to determine autophagic activity in human tissues, an endeavor that is hampered by the fact that autophagy is characterized by the flux of substrates whereas histology informs only about amounts and localization of substrates and regulators at a single timepoint. Despite this challenging task, considerable progress in establishing markers of autophagy has been made in recent years. The importance of establishing clear-cut autophagy markers that can be used for tissue analysis cannot be underestimated. In this review, we attempt to summarize known techniques to quantify autophagy in human tissue and their drawbacks. Furthermore, we provide some recommendations that should be taken into consideration to improve the reliability and the interpretation of autophagy biomarkers in human tissue samples.
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spelling Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshotautophagybiomarkerspathologydiseaseCiências Médicas::Ciências da SaúdeScience & TechnologyAutophagy is a highly conserved degradation mechanism that is essential for maintaining cellular homeostasis. In human disease, autophagy pathways are frequently deregulated and there is immense interest in targeting autophagy for therapeutic approaches. Accordingly, there is a need to determine autophagic activity in human tissues, an endeavor that is hampered by the fact that autophagy is characterized by the flux of substrates whereas histology informs only about amounts and localization of substrates and regulators at a single timepoint. Despite this challenging task, considerable progress in establishing markers of autophagy has been made in recent years. The importance of establishing clear-cut autophagy markers that can be used for tissue analysis cannot be underestimated. In this review, we attempt to summarize known techniques to quantify autophagy in human tissue and their drawbacks. Furthermore, we provide some recommendations that should be taken into consideration to improve the reliability and the interpretation of autophagy biomarkers in human tissue samples.This work was supported by grants from the Bernese Cancer League, “Stiftung für klinisch-experimentelle Tumorforschung”, and the Werner and Hedy Berger-Janser Foundation for Cancer Research (to M.H.); by Institute of Health Carlos III (ISCIII) and FEDER funds from the EU (PI14/01085 and PI17/00093) and supported by Miguel Servet contract by ISCIII and FSE funds (CPII16/00023) (to M.M.); from the Spanish Ministry of Science, Innovation and Universities (RTI2018-096748-B-100 to N.A.); from the University Professor Training Fellowship, Ministry of Science, Innovation and University, Government of Spain (FPU17/00026) (to P.C.O); from the ISCIII (PI16/00090 and PI19/01266) and the Andalusian Government (Consejería de Igualdad, Salud y Políticas Sociales, PI-0198-2016) for their financial support, and from the Biomedical Research Network Center for Liver and Digestive Diseases (CIBERehd) founded by the ISCIII and co-financed by European Development Regional Fund (EDRF) “A way to achieve Europe” for their financial support (to J.M.), from Breakthrough Cancer Research, Ireland funding (to S.L.M); from the PI18/00442 grant integrated into the State Plan for R & D + I2013-2016 and funded by the ISCIII and the ERDF, a way to make Europe (to G.V.); from the Luxembourg National Research Fund (C18/BM/12670304/COMBATIC to B.J.); from the Northern Portugal Regional Operational Programme (NORTE 2020), under the Portugal 2020 Partnership Agreement, by the European Regional Development Fund (FEDER), through the Competitiveness Factors Operational Programme (COMPETE) (NORTE-01-0145-FEDER-000013) and from the projects POCI-01-0145-FEDER-028159 and POCI-01-0145-FEDER-030782 by FEDER, through the COMPETE (to P.L.); from National funds, through the Foundation for Science and Technology (FCT) (to P.L.); from ARRS—the Slovenian research agency, programme P1-0140: Proteolysis and its regulation (led by B. Turk) (to E.Ž.); from the Swiss Cancer Research (KFS-3360-02-2014) (to A.P, and M.P.T.) (KFS-3409-02-2014), and the Swiss National Science Foundation (31003A_173219) (to M.P.T.).Multidisciplinary Digital Publishing InstituteUniversidade do MinhoHumbert, MagaliMorán, Maríade la Cruz-Ojeda, PatriciaMuntané, JordiWiedmer, TabeaApostolova, NadezdaMcKenna, Sharon L.Velasco, GuillermoBalduini, WalterEckhart, LeopoldJanji, BassamMarques, Maria Belém Sousa SampaioLudovico, PaulaŽerovnik, EvaLanger, RupertPerren, AurelEngedal, NikolaiTschan, Mario P.2020-03-212020-03-21T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/64832engHumbert, M.; Morán, M.; de la Cruz-Ojeda, P.; Muntané, J.; Wiedmer, T.; Apostolova, N.; McKenna, S.L.; Velasco, G.; Balduini, W.; Eckhart, L.; Janji, B.; Sampaio-Marques, B.; Ludovico, P.; Žerovnik, E.; Langer, R.; Perren, A.; Engedal, N.; Tschan, M.P. Assessing Autophagy in Archived Tissue or How to Capture Autophagic Flux from a Tissue Snapshot. Biology 2020, 9, 59.2079-773710.3390/biology9030059https://www.mdpi.com/2079-7737/9/3/59info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:38:43Zoai:repositorium.sdum.uminho.pt:1822/64832Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:35:13.698381Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
title Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
spellingShingle Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
Humbert, Magali
autophagy
biomarkers
pathology
disease
Ciências Médicas::Ciências da Saúde
Science & Technology
title_short Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
title_full Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
title_fullStr Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
title_full_unstemmed Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
title_sort Assessing autophagy in archived tissue or how to capture autophagic flux from a tissue snapshot
author Humbert, Magali
author_facet Humbert, Magali
Morán, María
de la Cruz-Ojeda, Patricia
Muntané, Jordi
Wiedmer, Tabea
Apostolova, Nadezda
McKenna, Sharon L.
Velasco, Guillermo
Balduini, Walter
Eckhart, Leopold
Janji, Bassam
Marques, Maria Belém Sousa Sampaio
Ludovico, Paula
Žerovnik, Eva
Langer, Rupert
Perren, Aurel
Engedal, Nikolai
Tschan, Mario P.
author_role author
author2 Morán, María
de la Cruz-Ojeda, Patricia
Muntané, Jordi
Wiedmer, Tabea
Apostolova, Nadezda
McKenna, Sharon L.
Velasco, Guillermo
Balduini, Walter
Eckhart, Leopold
Janji, Bassam
Marques, Maria Belém Sousa Sampaio
Ludovico, Paula
Žerovnik, Eva
Langer, Rupert
Perren, Aurel
Engedal, Nikolai
Tschan, Mario P.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Humbert, Magali
Morán, María
de la Cruz-Ojeda, Patricia
Muntané, Jordi
Wiedmer, Tabea
Apostolova, Nadezda
McKenna, Sharon L.
Velasco, Guillermo
Balduini, Walter
Eckhart, Leopold
Janji, Bassam
Marques, Maria Belém Sousa Sampaio
Ludovico, Paula
Žerovnik, Eva
Langer, Rupert
Perren, Aurel
Engedal, Nikolai
Tschan, Mario P.
dc.subject.por.fl_str_mv autophagy
biomarkers
pathology
disease
Ciências Médicas::Ciências da Saúde
Science & Technology
topic autophagy
biomarkers
pathology
disease
Ciências Médicas::Ciências da Saúde
Science & Technology
description Autophagy is a highly conserved degradation mechanism that is essential for maintaining cellular homeostasis. In human disease, autophagy pathways are frequently deregulated and there is immense interest in targeting autophagy for therapeutic approaches. Accordingly, there is a need to determine autophagic activity in human tissues, an endeavor that is hampered by the fact that autophagy is characterized by the flux of substrates whereas histology informs only about amounts and localization of substrates and regulators at a single timepoint. Despite this challenging task, considerable progress in establishing markers of autophagy has been made in recent years. The importance of establishing clear-cut autophagy markers that can be used for tissue analysis cannot be underestimated. In this review, we attempt to summarize known techniques to quantify autophagy in human tissue and their drawbacks. Furthermore, we provide some recommendations that should be taken into consideration to improve the reliability and the interpretation of autophagy biomarkers in human tissue samples.
publishDate 2020
dc.date.none.fl_str_mv 2020-03-21
2020-03-21T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/64832
url http://hdl.handle.net/1822/64832
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Humbert, M.; Morán, M.; de la Cruz-Ojeda, P.; Muntané, J.; Wiedmer, T.; Apostolova, N.; McKenna, S.L.; Velasco, G.; Balduini, W.; Eckhart, L.; Janji, B.; Sampaio-Marques, B.; Ludovico, P.; Žerovnik, E.; Langer, R.; Perren, A.; Engedal, N.; Tschan, M.P. Assessing Autophagy in Archived Tissue or How to Capture Autophagic Flux from a Tissue Snapshot. Biology 2020, 9, 59.
2079-7737
10.3390/biology9030059
https://www.mdpi.com/2079-7737/9/3/59
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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